» Articles » PMID: 21625860

Selection of Reference Genes for Normalization of QRT-PCR Analysis of Differentially Expressed Genes in Soybean Exposed to Cadmium

Overview
Journal Mol Biol Rep
Specialty Molecular Biology
Date 2011 Jun 1
PMID 21625860
Citations 20
Authors
Affiliations
Soon will be listed here.
Abstract

Accurate normalization of gene expression with qRT-PCR depends on the use of appropriate reference genes (RGs) for the species under a given set of experimental conditions. Multiple RGs for gene expression analysis of soybean exposed to heavy metal stress treatment have not been reported in the literature. In this study, we evaluated the expression stability of ten candidate RGs in leaves, roots and stems of two soybean cultivars exposed to cadmium (Cd). Based on the geNorm and NormFinder analysis, ACT3, PP2A, ELF1B and F-box were the most stable RGs in these gene expression studies. In contrast, G6PD, UBC2, TUB, and ELF1A were the most variable ones and should not be used as RGs in these experimental conditions.

Citing Articles

Identification and characterization of soybean phytochrome-interacting factors and their potential roles in abiotic stress.

Mu D, Shui Z, Guo H, Jiang H, Liu Y, Luo L BMC Plant Biol. 2024; 24(1):1273.

PMID: 39734206 PMC: 11684151. DOI: 10.1186/s12870-024-05950-4.


Identification of quantitative trait loci for lodging and related agronomic traits in soybean (Glycine max [L.] Merr.).

Chen B, Chai C, Duan M, Yang X, Cai Z, Jia J BMC Genomics. 2024; 25(1):900.

PMID: 39350068 PMC: 11440893. DOI: 10.1186/s12864-024-10794-1.


Identifying the Soybean microRNAs Related to Based on RNA Sequencing and Bioinformatics Analysis.

Zhang Z, Jin S, Tian H, Wang Z, Jiang R, Liu C Int J Mol Sci. 2023; 24(10).

PMID: 37239903 PMC: 10218560. DOI: 10.3390/ijms24108546.


Validation of Reference Genes for Studying Different Abiotic Stresses in Oat ( L.) by RT-qPCR.

Tajti J, Pal M, Janda T Plants (Basel). 2021; 10(7).

PMID: 34206660 PMC: 8309034. DOI: 10.3390/plants10071272.


Identification and Validation of Reference Genes for RT-qPCR Analysis in Switchgrass under Heavy Metal Stresses.

Zhao J, Zhou M, Meng Y Genes (Basel). 2020; 11(5).

PMID: 32375288 PMC: 7291066. DOI: 10.3390/genes11050502.


References
1.
Jonak C, Nakagami H, Hirt H . Heavy metal stress. Activation of distinct mitogen-activated protein kinase pathways by copper and cadmium. Plant Physiol. 2004; 136(2):3276-83. PMC: 523386. DOI: 10.1104/pp.104.045724. View

2.
Xu M, Zhang B, Su X, Zhang S, Huang M . Reference gene selection for quantitative real-time polymerase chain reaction in Populus. Anal Biochem. 2010; 408(2):337-9. DOI: 10.1016/j.ab.2010.08.044. View

3.
Remans T, Smeets K, Opdenakker K, Mathijsen D, Vangronsveld J, Cuypers A . Normalisation of real-time RT-PCR gene expression measurements in Arabidopsis thaliana exposed to increased metal concentrations. Planta. 2008; 227(6):1343-9. DOI: 10.1007/s00425-008-0706-4. View

4.
Jegadeesan S, Yu K, Poysa V, Gawalko E, Morrison M, Shi C . Mapping and validation of simple sequence repeat markers linked to a major gene controlling seed cadmium accumulation in soybean [Glycine max (L.) Merr]. Theor Appl Genet. 2010; 121(2):283-94. DOI: 10.1007/s00122-010-1309-6. View

5.
Maroufi A, Van Bockstaele E, Loose M . Validation of reference genes for gene expression analysis in chicory (Cichorium intybus) using quantitative real-time PCR. BMC Mol Biol. 2010; 11:15. PMC: 2830926. DOI: 10.1186/1471-2199-11-15. View