Pathway-based Classification of Lung Cancer: a Strategy to Guide Therapeutic Selection
Overview
Authors
Affiliations
The critical challenge in virtually all cancer research is heterogeneity: "Breast cancer" and "lung cancer" are actually collections of disease with distinct molecular mechanisms and clinical characteristics. The challenge is evident in the complexity of most cancers with multiple mutations and alterations generating the cancer phenotype, requiring therapeutic strategies that can match the complexity with equally complex combination regimens. Substantial progress in treatment requires major advances in methods to define refined, "common mechanism" subgroups to allow development of combination therapeutics that target these individual mechanisms. Our work is on the use of genomic signatures of oncogenic signaling pathways that provide an opportunity to dissect the complexity of lung cancer and to serve as tools to direct the use of targeted therapeutic agents.
PASI: A novel pathway method to identify delicate group effects.
Jaakkola M, McGlinchey A, Klen R, Elo L PLoS One. 2018; 13(7):e0199991.
PMID: 29975740 PMC: 6033442. DOI: 10.1371/journal.pone.0199991.
Boluki S, Shahrokh Esfahani M, Qian X, Dougherty E BMC Bioinformatics. 2018; 18(Suppl 14):552.
PMID: 29297278 PMC: 5751802. DOI: 10.1186/s12859-017-1893-4.
De novo pathway-based biomarker identification.
Alcaraz N, List M, Batra R, Vandin F, Ditzel H, Baumbach J Nucleic Acids Res. 2017; 45(16):e151.
PMID: 28934488 PMC: 5766193. DOI: 10.1093/nar/gkx642.
NFκB activation demarcates a subset of hepatocellular carcinoma patients for targeted therapy.
Ramesh V, Selvarasu K, Pandian J, Myilsamy S, Shanmugasundaram C, Ganesan K Cell Oncol (Dordr). 2016; 39(6):523-536.
PMID: 27562587 DOI: 10.1007/s13402-016-0294-4.
GalNAc-T14 promotes metastasis through Wnt dependent HOXB9 expression in lung adenocarcinoma.
Kwon O, Oh E, Park J, Lee J, Bae G, Koo J Oncotarget. 2015; 6(39):41916-28.
PMID: 26544896 PMC: 4747198. DOI: 10.18632/oncotarget.6019.