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Time-dependent and Outflow Boundary Conditions for Dissipative Particle Dynamics

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Journal J Comput Phys
Date 2011 Apr 19
PMID 21499548
Citations 18
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Abstract

We propose a simple method to impose both no-slip boundary conditions at fluid-wall interfaces and at outflow boundaries in fully developed regions for Dissipative Particle Dynamics (DPD) fluid systems. The procedure to enforce the no-slip condition is based on a velocity-dependent shear force, which is a generalized force to represent the presence of the solid-wall particles and to maintain locally thermodynamic consistency. We show that this method can be implemented in both steady and time-dependent fluid systems and compare the DPD results with the continuum limit (Navier-Stokes) results. We also develop a force-adaptive method to impose the outflow boundary conditions for fully developed flow with unspecified outflow velocity profile or pressure value. We study flows over the backward-facing step and in idealized arterial bifurcations using a combination of the two new boundary methods with different flow rates. Finally, we explore the applicability of the outflow method in time-dependent flow systems. The outflow boundary method works well for systems with Womersley number of O(1), i.e., when the pressure and flowrate at the outflow are approximately in-phase.

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References
1.
Pivkin I, Karniadakis G . Controlling density fluctuations in wall-bounded dissipative particle dynamics systems. Phys Rev Lett. 2006; 96(20):206001. DOI: 10.1103/PhysRevLett.96.206001. View

2.
Lei H, Caswell B, Karniadakis G . Direct construction of mesoscopic models from microscopic simulations. Phys Rev E Stat Nonlin Soft Matter Phys. 2010; 81(2 Pt 2):026704. PMC: 3693397. DOI: 10.1103/PhysRevE.81.026704. View

3.
Loudon C, Tordesillas A . The use of the dimensionless Womersley number to characterize the unsteady nature of internal flow. J Theor Biol. 1998; 191(1):63-78. DOI: 10.1006/jtbi.1997.0564. View

4.
Smiatek J, Allen M, Schmid F . Tunable-slip boundaries for coarse-grained simulations of fluid flow. Eur Phys J E Soft Matter. 2008; 26(1-2):115-22. DOI: 10.1140/epje/i2007-10311-4. View

5.
Pivkin I, Richardson P, Karniadakis G . Effect of red blood cells on platelet aggregation. IEEE Eng Med Biol Mag. 2009; 28(2):32-7. DOI: 10.1109/MEMB.2009.931788. View