Full-length De Novo Sequence of the Chlamydophila Psittaci Type Strain, 6BC

Overview

Journal J Bacteriol

Publisher American Society for Microbiology

Specialty Microbiology

Date 2011 Mar 29

PMID 21441521

Citations 13

Authors

Anja Voigt

Gerhard Schofl

Alexander Heidrich

Konrad Sachse

Hans Peter Saluz

Affiliations

Soon will be listed here.

Abstract

Chlamydophila psittaci is an obligate intracellular zoonotic pathogen, mainly of birds. It is the causative agent of psittacosis in birds and humans. Here we report the full-length de novo genome sequence of the avian isolate 6BC, the type strain of the species C. psittaci.

Citing Articles

A New SNP-Based Genotyping Method for : Application to Field Samples for Quick Identification.

Vorimore F, Aaziz R, de Barbeyrac B, Peuchant O, Szymanska-Czerwinska M, Herrmann B Microorganisms. 2021; 9(3).

PMID: 33803059 PMC: 8002925. DOI: 10.3390/microorganisms9030625.

Development of a Plasmid Shuttle Vector System for Genetic Manipulation of Chlamydia psittaci.

Shima K, Weber M, Schnee C, Sachse K, Kading N, Klinger M mSphere. 2020; 5(4).

PMID: 32848009 PMC: 7449628. DOI: 10.1128/mSphere.00787-20.

Data of genome assembly of the strain isolated from the livestock in Volga Region, Russian Federation.

Feodorova V, Zaitsev S, Khizhnyakova M, Saltykov Y, Evstifeev V, Khusainov F Data Brief. 2020; 29:105190.

PMID: 32071972 PMC: 7015991. DOI: 10.1016/j.dib.2020.105190.

Chlamydial Infection From Outside to Inside.

Gitsels A, Sanders N, Vanrompay D Front Microbiol. 2019; 10:2329.

PMID: 31649655 PMC: 6795091. DOI: 10.3389/fmicb.2019.02329.

Metagenomic Analysis of Fish-Associated Ca. Parilichlamydiaceae Reveals Striking Metabolic Similarities to the Terrestrial Chlamydiaceae.

Taylor-Brown A, Pillonel T, Greub G, Vaughan L, Nowak B, Polkinghorne A Genome Biol Evol. 2018; 10(10):2587-2595.

PMID: 30202970 PMC: 6171736. DOI: 10.1093/gbe/evy195.

References

Finn R, Mistry J, Tate J, Coggill P, Heger A, Pollington J . The Pfam protein families database. Nucleic Acids Res. 2009; 38(Database issue):D211-22. PMC: 2808889. DOI: 10.1093/nar/gkp985. View

Delcher A, Harmon D, Kasif S, White O, Salzberg S . Improved microbial gene identification with GLIMMER. Nucleic Acids Res. 1999; 27(23):4636-41. PMC: 148753. DOI: 10.1093/nar/27.23.4636. View

Lowe T, Eddy S . tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997; 25(5):955-64. PMC: 146525. DOI: 10.1093/nar/25.5.955. View

Horn M . Chlamydiae as symbionts in eukaryotes. Annu Rev Microbiol. 2008; 62:113-31. DOI: 10.1146/annurev.micro.62.081307.162818. View

Hemmerich C, Buechlein A, Podicheti R, Revanna K, Dong Q . An Ergatis-based prokaryotic genome annotation web server. Bioinformatics. 2010; 26(8):1122-4. DOI: 10.1093/bioinformatics/btq090. View

Van Droogenbroeck C, Beeckman D, Verminnen K, Marien M, Nauwynck H, Boesinghe L . Simultaneous zoonotic transmission of Chlamydophila psittaci genotypes D, F and E/B to a veterinary scientist. Vet Microbiol. 2008; 135(1-2):78-81. DOI: 10.1016/j.vetmic.2008.09.047. View

Harkinezhad T, Verminnen K, De Buyzere M, Rietzschel E, Bekaert S, Vanrompay D . Prevalence of Chlamydophila psittaci infections in a human population in contact with domestic and companion birds. J Med Microbiol. 2009; 58(Pt 9):1207-1212. DOI: 10.1099/jmm.0.011379-0. View

Eddy S . Profile hidden Markov models. Bioinformatics. 1999; 14(9):755-63. DOI: 10.1093/bioinformatics/14.9.755. View

Gaede W, Reckling K, Dresenkamp B, Kenklies S, Schubert E, Noack U . Chlamydophila psittaci infections in humans during an outbreak of psittacosis from poultry in Germany. Zoonoses Public Health. 2008; 55(4):184-8. DOI: 10.1111/j.1863-2378.2008.01108.x. View

10.

Pantchev A, Sting R, Bauerfeind R, Tyczka J, Sachse K . Detection of all Chlamydophila and Chlamydia spp. of veterinary interest using species-specific real-time PCR assays. Comp Immunol Microbiol Infect Dis. 2009; 33(6):473-84. DOI: 10.1016/j.cimid.2009.08.002. View

11.

Longbottom D, Coulter L . Animal chlamydioses and zoonotic implications. J Comp Pathol. 2003; 128(4):217-44. DOI: 10.1053/jcpa.2002.0629. View

12.

Bonfield J, Smith K, Staden R . A new DNA sequence assembly program. Nucleic Acids Res. 1995; 23(24):4992-9. PMC: 307504. DOI: 10.1093/nar/23.24.4992. View

13.

Haft D, Loftus B, Richardson D, Yang F, Eisen J, Paulsen I . TIGRFAMs: a protein family resource for the functional identification of proteins. Nucleic Acids Res. 2000; 29(1):41-3. PMC: 29844. DOI: 10.1093/nar/29.1.41. View

14.

Everett K, Bush R, ANDERSEN A . Emended description of the order Chlamydiales, proposal of Parachlamydiaceae fam. nov. and Simkaniaceae fam. nov., each containing one monotypic genus, revised taxonomy of the family Chlamydiaceae, including a new genus and five new species, and.... Int J Syst Bacteriol. 1999; 49 Pt 2:415-40. DOI: 10.1099/00207713-49-2-415. View

15.

Lagesen K, Hallin P, Rodland E, Staerfeldt H, Rognes T, Ussery D . RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 2007; 35(9):3100-8. PMC: 1888812. DOI: 10.1093/nar/gkm160. View