Aynaud M, Caldwell L, Al-Zahrani K, Barutcu S, Chan K, Obersterescu A
Nat Commun. 2024; 15(1):10795.
PMID: 39738001
PMC: 11685962.
DOI: 10.1038/s41467-024-55031-1.
Jansz N, Faulkner G
Biochem Soc Trans. 2024; 52(3):1431-1447.
PMID: 38747720
PMC: 11346438.
DOI: 10.1042/BST20231322.
King E, Tadele D, Pierce B, Hinczewski M, Scott J
PLoS Comput Biol. 2024; 20(2):e1011878.
PMID: 38386690
PMC: 10914271.
DOI: 10.1371/journal.pcbi.1011878.
Lobinska G, Pilpel Y, Nowak M
PLoS Biol. 2023; 21(8):e3002214.
PMID: 37552682
PMC: 10409280.
DOI: 10.1371/journal.pbio.3002214.
Shimada R, Alden E, Hoff K, Ding X, Sun J, Halasz A
Per Med. 2023; 20(1):13-25.
PMID: 36974726
PMC: 10350312.
DOI: 10.2217/pme-2022-0013.
Quasispecies Nature of RNA Viruses: Lessons from the Past.
Singh K, Mehta D, Dumka S, Chauhan A, Kumar S
Vaccines (Basel). 2023; 11(2).
PMID: 36851186
PMC: 9963406.
DOI: 10.3390/vaccines11020308.
Epidemic spreading under mutually independent intra- and inter-host pathogen evolution.
Zhang X, Ruan Z, Zheng M, Zhou J, Boccaletti S, Barzel B
Nat Commun. 2022; 13(1):6218.
PMID: 36266285
PMC: 9584276.
DOI: 10.1038/s41467-022-34027-9.
Transcriptomics and RNA-Based Therapeutics as Potential Approaches to Manage SARS-CoV-2 Infection.
Arriaga-Canon C, Contreras-Espinosa L, Rebollar-Vega R, Montiel-Manriquez R, Cedro-Tanda A, Garcia-Gordillo J
Int J Mol Sci. 2022; 23(19).
PMID: 36232363
PMC: 9570475.
DOI: 10.3390/ijms231911058.
A general approach to identify low-frequency variants within influenza samples collected during routine surveillance.
Van Poelvoorde L, Delcourt T, Vuylsteke M, de Keersmaecker S, Thomas I, Van Gucht S
Microb Genom. 2022; 8(9).
PMID: 36169645
PMC: 9676042.
DOI: 10.1099/mgen.0.000867.
Evaluating the structure-coefficient theorem of evolutionary game theory.
McAvoy A, Wakeley J
Proc Natl Acad Sci U S A. 2022; 119(28):e2119656119.
PMID: 35787041
PMC: 9282417.
DOI: 10.1073/pnas.2119656119.
Experimental and mathematical insights on the interactions between poliovirus and a defective interfering genome.
Shirogane Y, Rousseau E, Voznica J, Xiao Y, Su W, Catching A
PLoS Pathog. 2021; 17(9):e1009277.
PMID: 34570820
PMC: 8496841.
DOI: 10.1371/journal.ppat.1009277.
Avian Influenza H7N9 Virus Adaptation to Human Hosts.
Tan S, Sjaugi M, Fong S, Chong L, Abd Raman H, Nik Mohamed N
Viruses. 2021; 13(5).
PMID: 34068495
PMC: 8150935.
DOI: 10.3390/v13050871.
Quasispecies of SARS-CoV-2 revealed by single nucleotide polymorphisms (SNPs) analysis.
Gao R, Zu W, Liu Y, Li J, Li Z, Wen Y
Virulence. 2021; 12(1):1209-1226.
PMID: 34030593
PMC: 8158041.
DOI: 10.1080/21505594.2021.1911477.
Quasispecies Theory in Virology.
Domingo E
J Virol. 2021; 76(1):463-465.
PMID: 33739796
PMC: 135734.
DOI: 10.1128/JVI.76.1.463-465.2002.
Next-Generation Sequencing Analysis of the Within-Host Genetic Diversity of Influenza A(H1N1)pdm09 Viruses in the Upper and Lower Respiratory Tracts of Patients with Severe Influenza.
Takayama I, Nguyen B, Dao C, Pham T, Dang T, Truong P
mSphere. 2021; 6(1).
PMID: 33408229
PMC: 7845592.
DOI: 10.1128/mSphere.01043-20.
Viral Symbiosis in the Origins and Evolution of Life with a Particular Focus on the Placental Mammals.
Ryan F
Results Probl Cell Differ. 2020; 69:3-24.
PMID: 33263867
DOI: 10.1007/978-3-030-51849-3_1.
Inter- Versus Intra-Host Sequence Diversity of pH1N1 and Associated Clinical Outcomes.
Al Khatib H, Al Maslamani M, Coyle P, Thompson I, Farag E, Al Thani A
Microorganisms. 2020; 8(1).
PMID: 31963512
PMC: 7022955.
DOI: 10.3390/microorganisms8010133.
Model genotype-phenotype mappings and the algorithmic structure of evolution.
Nichol D, Robertson-Tessi M, Anderson A, Jeavons P
J R Soc Interface. 2019; 16(160):20190332.
PMID: 31690233
PMC: 6893500.
DOI: 10.1098/rsif.2019.0332.
Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis.
Viehweger A, Krautwurst S, Lamkiewicz K, Madhugiri R, Ziebuhr J, Holzer M
Genome Res. 2019; 29(9):1545-1554.
PMID: 31439691
PMC: 6724671.
DOI: 10.1101/gr.247064.118.
Metagenomes of a Freshwater Charavirus from British Columbia Provide a Window into Ancient Lineages of Viruses.
Vlok M, Gibbs A, Suttle C
Viruses. 2019; 11(3).
PMID: 30934644
PMC: 6466400.
DOI: 10.3390/v11030299.