Integrative Genomics Viewer

Overview

Journal Nat Biotechnol

Specialty Biotechnology

Date 2011 Jan 12

PMID 21221095

Citations 7770

Authors

James T Robinson

Helga Thorvaldsdottir

Wendy Winckler

Mitchell Guttman

Eric S Lander

Gad Getz

Jill P Mesirov

Affiliations

Soon will be listed here.

Citing Articles

cfDNA hydroxymethylcytosine profiling for detection metastasis and recurrence of Esophageal Squamous Cell Carcinoma.

Kuerban S, Chen H, Chen L, Zhang L, Li X, Zhen B World J Surg Oncol. 2025; 23(1):90.

PMID: 40089765 DOI: 10.1186/s12957-025-03747-9.

CBX3 promotes multidrug resistance by suppressing ferroptosis in colorectal carcinoma via the CUL3/NRF2/GPX2 axis.

Bai X, Duan T, Shao J, Zhang Y, Xing G, Wang J Oncogene. 2025; .

PMID: 40089640 DOI: 10.1038/s41388-025-03337-9.

Septoria tritici blotch resistance gene Stb15 encodes a lectin receptor-like kinase.

Hafeez A, Chartrain L, Feng C, Cambon F, Clarke M, Griffiths S Nat Plants. 2025; .

PMID: 40087541 DOI: 10.1038/s41477-025-01920-2.

A versatile toolbox for determining IRES activity in cells and embryonic tissues.

Koch P, Zhang Z, Genuth N, Susanto T, Haimann M, Khmelinskaia A EMBO J. 2025; .

PMID: 40082722 DOI: 10.1038/s44318-025-00404-5.

Quantifying the effects of computational filter criteria on the accurate identification of de novo mutations at varying levels of sequencing coverage.

Milhaven M, Garg A, Versoza C, Pfeifer S Heredity (Edinb). 2025; .

PMID: 40082647 DOI: 10.1038/s41437-025-00754-0.

References

Nicol J, Helt G, Blanchard Jr S, Raja A, Loraine A . The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets. Bioinformatics. 2009; 25(20):2730-1. PMC: 2759552. DOI: 10.1093/bioinformatics/btp472. View

Nielsen C, Cantor M, Dubchak I, Gordon D, Wang T . Visualizing genomes: techniques and challenges. Nat Methods. 2010; 7(3 Suppl):S5-S15. DOI: 10.1038/nmeth.1422. View

Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F . Tablet--next generation sequence assembly visualization. Bioinformatics. 2009; 26(3):401-2. PMC: 2815658. DOI: 10.1093/bioinformatics/btp666. View

Huang W, Marth G . EagleView: a genome assembly viewer for next-generation sequencing technologies. Genome Res. 2008; 18(9):1538-43. PMC: 2527701. DOI: 10.1101/gr.076067.108. View

Guttman M, Amit I, Garber M, French C, Lin M, Feldser D . Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature. 2009; 458(7235):223-7. PMC: 2754849. DOI: 10.1038/nature07672. View

Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream M . Artemis: sequence visualization and annotation. Bioinformatics. 2000; 16(10):944-5. DOI: 10.1093/bioinformatics/16.10.944. View

. The ENCODE (ENCyclopedia Of DNA Elements) Project. Science. 2004; 306(5696):636-40. DOI: 10.1126/science.1105136. View

Tomancak P, Beaton A, Weiszmann R, Kwan E, Shu S, Lewis S . Systematic determination of patterns of gene expression during Drosophila embryogenesis. Genome Biol. 2003; 3(12):RESEARCH0088. PMC: 151190. DOI: 10.1186/gb-2002-3-12-research0088. View

Verhaak R, Hoadley K, Purdom E, Wang V, Qi Y, Wilkerson M . Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. Cancer Cell. 2010; 17(1):98-110. PMC: 2818769. DOI: 10.1016/j.ccr.2009.12.020. View

10.

Bao H, Guo H, Wang J, Zhou R, Lu X, Shi S . MapView: visualization of short reads alignment on a desktop computer. Bioinformatics. 2009; 25(12):1554-5. DOI: 10.1093/bioinformatics/btp255. View

11.

Fiume M, Williams V, Brook A, Brudno M . Savant: genome browser for high-throughput sequencing data. Bioinformatics. 2010; 26(16):1938-44. PMC: 3271355. DOI: 10.1093/bioinformatics/btq332. View