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An Efficient New Route to Dihydropyranobenzimidazole Inhibitors of HCV Replication

Overview
Journal Molecules
Publisher MDPI
Specialty Biology
Date 2011 Jan 4
PMID 21193848
Citations 8
Authors
Affiliations
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Abstract

A class of dihydropyranobenzimidazole inhibitors was recently discovered that acts against the hepatitis C virus (HCV) in a new way, binding to the IRES-IIa subdomain of the highly conserved 5' untranslated region of the viral RNA and thus preventing the ribosome from initiating translation. However, the reported synthesis of these compounds is lengthy and low-yielding, the intermediates are troublesome to purify, and the route is poorly structured for the creation of libraries. We report a streamlined route to this class of inhibitors in which yields are far higher and most intermediates are crystalline. In addition, a key variable side chain is introduced late in the synthesis, allowing analogs to be easily synthesized for optimization of antiviral activity.

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References
1.
Yoshikawa K, Yokomizo A, Naito H, Haginoya N, Kobayashi S, Yoshino T . Design, synthesis, and SAR of cis-1,2-diaminocyclohexane derivatives as potent factor Xa inhibitors. Part I: exploration of 5-6 fused rings as alternative S1 moieties. Bioorg Med Chem. 2009; 17(24):8206-20. DOI: 10.1016/j.bmc.2009.10.023. View

2.
. EASL International Consensus Conference on hepatitis C. Paris, 26-27 February 1999. Consensus statement. J Hepatol. 2000; 31 Suppl 1:3-8. View

3.
Lo H, Bentzien J, Fleck R, Pullen S, Khine H, Woska Jr J . 2-Aminobenzimidazoles as potent ITK antagonists: trans-stilbene-like moieties targeting the kinase specificity pocket. Bioorg Med Chem Lett. 2008; 18(23):6218-21. DOI: 10.1016/j.bmcl.2008.09.098. View

4.
Seth P, Miyaji A, Jefferson E, Sannes-Lowery K, Osgood S, Propp S . SAR by MS: discovery of a new class of RNA-binding small molecules for the hepatitis C virus: internal ribosome entry site IIA subdomain. J Med Chem. 2005; 48(23):7099-102. DOI: 10.1021/jm050815o. View

5.
Parsons J, Castaldi M, Dutta S, Dibrov S, Wyles D, Hermann T . Conformational inhibition of the hepatitis C virus internal ribosome entry site RNA. Nat Chem Biol. 2009; 5(11):823-5. PMC: 2770845. DOI: 10.1038/nchembio.217. View