» Articles » PMID: 20877578

Economy of Operon Formation: Cotranscription Minimizes Shortfall in Protein Complexes

Overview
Journal mBio
Specialty Microbiology
Date 2010 Sep 30
PMID 20877578
Citations 17
Authors
Affiliations
Soon will be listed here.
Abstract

Genes of prokaryotes and Archaea are often organized in cotranscribed groups, or operons. In contrast, eukaryotic genes are generally transcribed independently. Here we show that there is a substantial economic gain for the cell to cotranscribe genes encoding protein complexes because it synchronizes the fluctuations, or noise, in the levels of the different components. This correlation substantially reduces the shortfall in production of the complex. This benefit is relatively large in small cells such as bacterial cells, in which there are few mRNAs and proteins per cell, and is diminished in larger cells such as eukaryotic cells.

Citing Articles

A new selective force driving metabolic gene clustering.

Fondi M, Pini F, Riccardi C, Gemo P, Brilli M mSystems. 2024; 9(11):e0096024.

PMID: 39465945 PMC: 11629862. DOI: 10.1128/msystems.00960-24.


Cross-evaluation of E. coli's operon structures via a whole-cell model suggests alternative cellular benefits for low- versus high-expressing operons.

Sun G, DeFelice M, Gillies T, Ahn-Horst T, Andrews C, Krummenacker M Cell Syst. 2024; 15(3):227-245.e7.

PMID: 38417437 PMC: 10957310. DOI: 10.1016/j.cels.2024.02.002.


Large protein complex interfaces have evolved to promote cotranslational assembly.

Badonyi M, Marsh J Elife. 2022; 11.

PMID: 35899946 PMC: 9365393. DOI: 10.7554/eLife.79602.


Experimental demonstration of operon formation catalyzed by insertion sequence.

Kanai Y, Tsuru S, Furusawa C Nucleic Acids Res. 2022; 50(3):1673-1686.

PMID: 35066585 PMC: 8860574. DOI: 10.1093/nar/gkac004.


RNAs as Regulators of Cellular Matchmaking.

Fernandes N, Buchan J Front Mol Biosci. 2021; 8:634146.

PMID: 33898516 PMC: 8062979. DOI: 10.3389/fmolb.2021.634146.


References
1.
Peterson J, Umayam L, Dickinson T, Hickey E, White O . The Comprehensive Microbial Resource. Nucleic Acids Res. 2000; 29(1):123-5. PMC: 29848. DOI: 10.1093/nar/29.1.123. View

2.
Cozy L, Kearns D . Gene position in a long operon governs motility development in Bacillus subtilis. Mol Microbiol. 2010; 76(2):273-85. PMC: 2911795. DOI: 10.1111/j.1365-2958.2010.07112.x. View

3.
Tabor J, Bayer T, Simpson Z, Levy M, Ellington A . Engineering stochasticity in gene expression. Mol Biosyst. 2008; 4(7):754-61. PMC: 2630191. DOI: 10.1039/b801245h. View

4.
Taniguchi Y, Choi P, Li G, Chen H, Babu M, Hearn J . Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science. 2010; 329(5991):533-8. PMC: 2922915. DOI: 10.1126/science.1188308. View

5.
Keseler I, Bonavides-Martinez C, Collado-Vides J, Gama-Castro S, Gunsalus R, Johnson D . EcoCyc: a comprehensive view of Escherichia coli biology. Nucleic Acids Res. 2008; 37(Database issue):D464-70. PMC: 2686493. DOI: 10.1093/nar/gkn751. View