» Articles » PMID: 20711441

An Association Test for Multiple Traits Based on the Generalized Kendall's Tau

Overview
Journal J Am Stat Assoc
Specialty Public Health
Date 2010 Aug 17
PMID 20711441
Citations 38
Authors
Affiliations
Soon will be listed here.
Abstract

In many genetics studies, especially in the investigation of mental illness and behavioral disorders, it is common for researchers to collect multiple phenotypes to characterize the complex disease of interest. It may be advantageous to analyze those phenotypic measurements simultaneously if they share a similar genetic mechanism. In this study, we present a nonparametric approach to studying multiple traits together rather than examining each trait separately. Through simulation we compared the nominal type I error and power of our proposed test to an existing test, i.e., a generalized family-based association test. The empirical results suggest that our proposed approach is superior to the existing test in the analysis of ordinal traits. The advantage is demonstrated on a data set concerning alcohol dependence. In this application, the use of our methods enhanced the signal of the association test.

Citing Articles

Multiple phenotype association tests based on sliced inverse regression.

Sun W, Jon K, Zhu W BMC Bioinformatics. 2024; 25(1):144.

PMID: 38575890 PMC: 10996256. DOI: 10.1186/s12859-024-05731-8.


Association detection between multiple traits and rare variants based on family data via a nonparametric method.

Chi J, Xu M, Sheng X, Zhou Y PeerJ. 2023; 11:e16040.

PMID: 37780393 PMC: 10541022. DOI: 10.7717/peerj.16040.


Three pleiotropic loci associated with bone mineral density and lean body mass.

Zhang Y, Zhang S, Ran S, Liu Y, Zhang H, Yang X Mol Genet Genomics. 2020; 296(1):55-65.

PMID: 32970232 PMC: 7903521. DOI: 10.1007/s00438-020-01724-3.


Identification of pleiotropic loci underlying hip bone mineral density and trunk lean mass.

Feng G, Wei X, Zhang H, Yang X, Shen H, Tian Q J Hum Genet. 2020; 66(3):251-260.

PMID: 32929176 PMC: 7880826. DOI: 10.1038/s10038-020-00835-4.


"How Is My Child's Asthma?" Digital Phenotype and Actionable Insights for Pediatric Asthma.

Jaimini U, Thirunarayan K, Kalra M, Venkataraman R, Kadariya D, Sheth A JMIR Pediatr Parent. 2019; 1(2):e11988.

PMID: 31008446 PMC: 6469868. DOI: 10.2196/11988.


References
1.
Zhang H, Wang X, Ye Y . Detection of genes for ordinal traits in nuclear families and a unified approach for association studies. Genetics. 2005; 172(1):693-9. PMC: 1456175. DOI: 10.1534/genetics.105.049122. View

2.
Arking D, Pfeufer A, Post W, Kao W, Newton-Cheh C, Ikeda M . A common genetic variant in the NOS1 regulator NOS1AP modulates cardiac repolarization. Nat Genet. 2006; 38(6):644-51. DOI: 10.1038/ng1790. View

3.
Ma J, Beuten J, Payne T, Dupont R, Elston R, Li M . Haplotype analysis indicates an association between the DOPA decarboxylase (DDC) gene and nicotine dependence. Hum Mol Genet. 2005; 14(12):1691-8. DOI: 10.1093/hmg/ddi177. View

4.
Dudoit S, Speed T . A score test for the linkage analysis of qualitative and quantitative traits based on identity by descent data from sib-pairs. Biostatistics. 2003; 1(1):1-26. DOI: 10.1093/biostatistics/1.1.1. View

5.
Rabinowitz D, Laird N . A unified approach to adjusting association tests for population admixture with arbitrary pedigree structure and arbitrary missing marker information. Hum Hered. 2000; 50(4):211-23. DOI: 10.1159/000022918. View