» Articles » PMID: 20542371

What Can Solid State NMR Contribute to Our Understanding of Protein Folding?

Overview
Journal Biophys Chem
Specialty Biochemistry
Date 2010 Jun 15
PMID 20542371
Citations 12
Authors
Affiliations
Soon will be listed here.
Abstract

Complete understanding of the folding process that connects a structurally disordered state of a protein to an ordered, biochemically functional state requires detailed characterization of intermediate structural states with high resolution and site specificity. While the intrinsically inhomogeneous and dynamic nature of unfolded and partially folded states limits the efficacy of traditional X-ray diffraction and solution NMR in structural studies, solid state NMR methods applied to frozen solutions can circumvent the complications due to molecular motions and conformational exchange encountered in unfolded and partially folded states. Moreover, solid state NMR methods can provide both qualitative and quantitative structural information at the site-specific level, even in the presence of structural inhomogeneity. This article reviews relevant solid state NMR methods and their initial applications to protein folding studies. Using either chemical denaturation to prepare unfolded states at equilibrium or a rapid freezing apparatus to trap non-equilibrium, transient structural states on a sub-millisecond time scale, recent results demonstrate that solid state NMR can contribute essential information about folding processes that is not available from more familiar biophysical methods.

Citing Articles

Resolution in cryogenic solid state NMR: Challenges and solutions.

Sergeyev I, Fritzsching K, Rogawski R, McDermott A Protein Sci. 2023; 33(7):e4803.

PMID: 37847566 PMC: 11184935. DOI: 10.1002/pro.4803.


Characterization of conformational heterogeneity via higher-dimensionality, proton-detected solid-state NMR.

Burakova E, Vasa S, Linser R J Biomol NMR. 2022; 76(5-6):197-212.

PMID: 36149571 PMC: 9712413. DOI: 10.1007/s10858-022-00405-0.


Cryogenic Sample Loading into a Magic Angle Spinning Nuclear Magnetic Resonance Spectrometer that Preserves Cellular Viability.

Ghosh R, Kragelj J, Xiao Y, Frederick K J Vis Exp. 2020; (163).

PMID: 32955491 PMC: 7797162. DOI: 10.3791/61733.


Atomic-level insight into mRNA processing bodies by combining solid and solution-state NMR spectroscopy.

Damman R, Schutz S, Luo Y, Weingarth M, Sprangers R, Baldus M Nat Commun. 2019; 10(1):4536.

PMID: 31586050 PMC: 6778109. DOI: 10.1038/s41467-019-12402-3.


Structural analysis of the Aβ(11-42) amyloid fibril based on hydrophobicity distribution.

Roterman I, Dulak D, Gadzala M, Banach M, Konieczny L J Comput Aided Mol Des. 2019; 33(7):665-675.

PMID: 31292794 PMC: 6687686. DOI: 10.1007/s10822-019-00209-9.


References
1.
Fernandez A, Shen M, Colubri A, Sosnick T, Berry R, Freed K . Large-scale context in protein folding: villin headpiece. Biochemistry. 2003; 42(3):664-71. DOI: 10.1021/bi026510i. View

2.
Wu J, Breydo L, Isas J, Lee J, Kuznetsov Y, Langen R . Fibrillar oligomers nucleate the oligomerization of monomeric amyloid beta but do not seed fibril formation. J Biol Chem. 2009; 285(9):6071-9. PMC: 2825401. DOI: 10.1074/jbc.M109.069542. View

3.
Tycko R . Symmetry-based constant-time homonuclear dipolar recoupling in solid state NMR. J Chem Phys. 2007; 126(6):064506. DOI: 10.1063/1.2437194. View

4.
Smith L, Bolin K, Schwalbe H, MacArthur M, Thornton J, Dobson C . Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations. J Mol Biol. 1996; 255(3):494-506. DOI: 10.1006/jmbi.1996.0041. View

5.
Lansing J, Hohwy M, Jaroniec C, Creemers A, Lugtenburg J, Herzfeld J . Chromophore distortions in the bacteriorhodopsin photocycle: evolution of the H-C14-C15-H dihedral angle measured by solid-state NMR. Biochemistry. 2002; 41(2):431-8. DOI: 10.1021/bi011529r. View