» Articles » PMID: 20142484

Abasic Sites and Strand Breaks in DNA Cause Transcriptional Mutagenesis in Escherichia Coli

Overview
Specialty Science
Date 2010 Feb 10
PMID 20142484
Citations 25
Authors
Affiliations
Soon will be listed here.
Abstract

DNA damage occurs continuously, and faithful replication and transcription are essential for maintaining cell viability. Cells in nature are not dividing and replicating DNA often; therefore it is important to consider the outcome of RNA polymerase (RNAP) encounters with DNA damage. Base damage in the DNA can affect transcriptional fidelity, leading to production of mutant mRNA and protein in a process termed transcriptional mutagenesis (TM). Abasic (AP) sites and strand breaks are frequently occurring, spontaneous damages that are also base excision repair (BER) intermediates. In vitro studies have demonstrated that these lesions can be bypassed by RNAP; however this has never been assessed in vivo. This study demonstrates that RNAP is capable of bypassing AP sites and strand breaks in Escherichia coli and results in TM through adenine incorporation in nascent mRNA. Elimination of the enzymes that process these lesions further increases TM; however, such mutants can still complete repair by other downstream pathways. These results show that AP sites and strand breaks can result in mutagenic RNAP bypass and have important implications for the biologic endpoints of DNA damage.

Citing Articles

Size- and Stereochemistry-Dependent Transcriptional Bypass of DNA Alkyl Phosphotriester Adducts in Mammalian Cells.

Tan Y, Wu J, Clabaugh G, Li L, Du H, Wang Y DNA (Basel). 2023; 2(4):221-230.

PMID: 36911626 PMC: 9997456. DOI: 10.3390/dna2040016.


RNAPII response to transcription-blocking DNA lesions in mammalian cells.

Wang J, Sadurni M, Saponaro M FEBS J. 2022; 290(18):4382-4394.

PMID: 35731652 PMC: 10952651. DOI: 10.1111/febs.16561.


RNA polymerase pausing, stalling and bypass during transcription of damaged DNA: from molecular basis to functional consequences.

Agapov A, Olina A, Kulbachinskiy A Nucleic Acids Res. 2022; 50(6):3018-3041.

PMID: 35323981 PMC: 8989532. DOI: 10.1093/nar/gkac174.


Nick-seq for single-nucleotide resolution genomic maps of DNA modifications and damage.

Cao B, Wu X, Zhou J, Wu H, Liu L, Zhang Q Nucleic Acids Res. 2020; 48(12):6715-6725.

PMID: 32484547 PMC: 7337925. DOI: 10.1093/nar/gkaa473.


Role of the trigger loop in translesion RNA synthesis by bacterial RNA polymerase.

Agapov A, Ignatov A, Turtola M, Belogurov G, Esyunina D, Kulbachinskiy A J Biol Chem. 2020; 295(28):9583-9595.

PMID: 32439804 PMC: 7363142. DOI: 10.1074/jbc.RA119.011844.


References
1.
Zhou W, Reines D, Doetsch P . T7 RNA polymerase bypass of large gaps on the template strand reveals a critical role of the nontemplate strand in elongation. Cell. 1995; 82(4):577-85. PMC: 3375833. DOI: 10.1016/0092-8674(95)90030-6. View

2.
Zhou W, Doetsch P . Efficient bypass and base misinsertions at abasic sites by prokaryotic RNA polymerases. Ann N Y Acad Sci. 1994; 726:351-4. DOI: 10.1111/j.1749-6632.1994.tb52849.x. View

3.
Saxowsky T, Meadows K, Klungland A, Doetsch P . 8-Oxoguanine-mediated transcriptional mutagenesis causes Ras activation in mammalian cells. Proc Natl Acad Sci U S A. 2008; 105(48):18877-82. PMC: 2596238. DOI: 10.1073/pnas.0806464105. View

4.
Dulebohn D, Choy J, Sundermeier T, Okan N, Karzai A . Trans-translation: the tmRNA-mediated surveillance mechanism for ribosome rescue, directed protein degradation, and nonstop mRNA decay. Biochemistry. 2007; 46(16):4681-93. DOI: 10.1021/bi6026055. View

5.
Sternberg N, Maurer R . Bacteriophage-mediated generalized transduction in Escherichia coli and Salmonella typhimurium. Methods Enzymol. 1991; 204:18-43. DOI: 10.1016/0076-6879(91)04004-8. View