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XDS

Overview
Journal Acta Crystallogr D Biol Crystallogr
Specialty Chemistry
Date 2010 Feb 4
PMID 20124692
Citations 9014
Authors
Wolfgang Kabsch
Affiliations
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Abstract

The usage and control of recent modifications of the program package XDS for the processing of rotation images are described in the context of previous versions. New features include automatic determination of spot size and reflecting range and recognition and assignment of crystal symmetry. Moreover, the limitations of earlier package versions on the number of correction/scaling factors and the representation of pixel contents have been removed. Large program parts have been restructured for parallel processing so that the quality and completeness of collected data can be assessed soon after measurement.

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References
1.
Evans P . Scaling and assessment of data quality. Acta Crystallogr D Biol Crystallogr. 2005; 62(Pt 1):72-82. DOI: 10.1107/S0907444905036693. View
2.
Kabsch W . Integration, scaling, space-group assignment and post-refinement. Acta Crystallogr D Biol Crystallogr. 2010; 66(Pt 2):133-44. PMC: 2815666. DOI: 10.1107/S0907444909047374. View
3.
Brunger A . Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. Nature. 1992; 355(6359):472-5. DOI: 10.1038/355472a0. View
4.
Diederichs K, Karplus P . Improved R-factors for diffraction data analysis in macromolecular crystallography. Nat Struct Biol. 1997; 4(4):269-75. DOI: 10.1038/nsb0497-269. View
5.
Diederichs K, McSweeney S, Ravelli R . Zero-dose extrapolation as part of macromolecular synchrotron data reduction. Acta Crystallogr D Biol Crystallogr. 2003; 59(Pt 5):903-9. DOI: 10.1107/s0907444903006516. View