Sharp Phylogeographic Breaks and Patterns of Genealogical Concordance in the Brine Shrimp Artemia Franciscana

Overview

Journal Int J Mol Sci

Publisher MDPI

Specialties Biochemistry
Chemistry
Molecular Biology

Date 2010 Jan 8

PMID 20054480

Citations 5

Authors

Stefania Maniatsi

Ilias Kappas

Athanasios D Baxevanis

Theodora Farmaki

Theodore J Abatzopoulos

Affiliations

Soon will be listed here.

Abstract

Genealogical concordance is a critical overlay of all phylogenetic analyses, irrespective of taxonomic level. To assess such patterns of congruence we have compiled and derived sequence data for two mitochondrial (16S rRNA, COI) and two nuclear (ITS1, p26) markers in 14 American populations of the hypersaline branchiopod Artemia franciscana. Cladistic analysis revealed three reciprocally monophyletic mitochondrial clades. For nuclear DNA, incomplete lineage sorting was evident presumably as a result of slower coalescence or male-mediated dispersal. Our findings capture the genealogical interval between gene splitting and population divergence. In this sense, strong indications are provided in favour of a superspecies status and ongoing speciation in A. franciscana.

Citing Articles

Morphology and morphometry of morphotypes in the population of (Kellogg, 1906) from salterns of the southeastern coast of India.

Thirunavukkarasu S, Murugan G, Hwang J, Munuswamy N Heliyon. 2024; 10(9):e29796.

PMID: 38707297 PMC: 11068535. DOI: 10.1016/j.heliyon.2024.e29796.

Chromosome-Level Assembly of Artemia franciscana Sheds Light on Sex Chromosome Differentiation.

Bett V, Macon A, Vicoso B, Elkrewi M Genome Biol Evol. 2024; 16(1).

PMID: 38245839 PMC: 10827361. DOI: 10.1093/gbe/evae006.

Settling taxonomic and nomenclatural problems in brine shrimps, (Crustacea: Branchiopoda: Anostraca), by integrating mitogenomics, marker discordances and nomenclature rules.

Sainz-Escudero L, Lopez-Estrada E, Rodriguez-Flores P, Garcia-Paris M PeerJ. 2021; 9:e10865.

PMID: 33854829 PMC: 7955675. DOI: 10.7717/peerj.10865.

Bird migratory flyways influence the phylogeography of the invasive brine shrimp Artemia franciscana in its native American range.

Munoz J, Amat F, Green A, Figuerola J, Gomez A PeerJ. 2013; 1:e200.

PMID: 24255814 PMC: 3828609. DOI: 10.7717/peerj.200.

Isolation-driven divergence: speciation in a widespread North American songbird (Aves: Certhiidae).

Manthey J, Klicka J, Spellman G Mol Ecol. 2011; 20(20):4371-84.

PMID: 21933295 PMC: 3256251. DOI: 10.1111/j.1365-294X.2011.05270.x.

References

Lee C . Global phylogeography of a cryptic copepod species complex and reproductive isolation between genetically proximate "populations". Evolution. 2001; 54(6):2014-27. DOI: 10.1111/j.0014-3820.2000.tb01245.x. View

Gomez A, Carvalho G, Lunt D . Phylogeography and regional endemism of a passively dispersing zooplankter: mitochondrial DNA variation in rotifer resting egg banks. Proc Biol Sci. 2001; 267(1458):2189-97. PMC: 1690794. DOI: 10.1098/rspb.2000.1268. View

Munoz J, Gomez A, Green A, Figuerola J, Amat F, Rico C . Phylogeography and local endemism of the native Mediterranean brine shrimp Artemia salina (Branchiopoda: Anostraca). Mol Ecol. 2008; 17(13):3160-77. DOI: 10.1111/j.1365-294X.2008.03818.x. View

De Gelas K, De Meester L . Phylogeography of Daphnia magna in Europe. Mol Ecol. 2005; 14(3):753-64. DOI: 10.1111/j.1365-294X.2004.02434.x. View

Gajardo G, Sorgeloos P, Beardmore J . Inland hypersaline lakes and the brine shrimp Artemia as simple models for biodiversity analysis at the population level. Saline Syst. 2006; 2:14. PMC: 1684253. DOI: 10.1186/1746-1448-2-14. View

Adamowicz S, Petrusek A, Colbourne J, Hebert P, Witt J . The scale of divergence: a phylogenetic appraisal of intercontinental allopatric speciation in a passively dispersed freshwater zooplankton genus. Mol Phylogenet Evol. 2009; 50(3):423-36. DOI: 10.1016/j.ympev.2008.11.026. View

Crusz H . The dilemma of subspecies. Trends Ecol Evol. 2011; 1(4):104. DOI: 10.1016/0169-5347(86)90035-2. View

Kappas I, Baxevanis A, Maniatsi S, Abatzopoulos T . Porous genomes and species integrity in the branchiopod Artemia. Mol Phylogenet Evol. 2009; 52(1):192-204. DOI: 10.1016/j.ympev.2009.03.012. View

Templeton A . Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Mol Ecol. 1998; 7(4):381-97. DOI: 10.1046/j.1365-294x.1998.00308.x. View

10.

Tamura K, Dudley J, Nei M, Kumar S . MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol. 2007; 24(8):1596-9. DOI: 10.1093/molbev/msm092. View

11.

Jensen J, Bohonak A, Kelley S . Isolation by distance, web service. BMC Genet. 2005; 6:13. PMC: 1079815. DOI: 10.1186/1471-2156-6-13. View

12.

Thompson J, Gibson T, Plewniak F, Jeanmougin F, Higgins D . The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1998; 25(24):4876-82. PMC: 147148. DOI: 10.1093/nar/25.24.4876. View

13.

Bernardi G, Sordino P, Powers D . Concordant mitochondrial and nuclear DNA phylogenies for populations of the teleost fish Fundulus heteroclitus. Proc Natl Acad Sci U S A. 1993; 90(20):9271-4. PMC: 47549. DOI: 10.1073/pnas.90.20.9271. View

14.

Templeton A . Using phylogeographic analyses of gene trees to test species status and processes. Mol Ecol. 2001; 10(3):779-91. DOI: 10.1046/j.1365-294x.2001.01199.x. View

15.

Hudson R, Boos D, Kaplan N . A statistical test for detecting geographic subdivision. Mol Biol Evol. 1992; 9(1):138-51. DOI: 10.1093/oxfordjournals.molbev.a040703. View

16.

Gomez A, Serra M, Carvalho G, Lunt D . Speciation in ancient cryptic species complexes: evidence from the molecular phylogeny of Brachionus plicatilis (Rotifera). Evolution. 2002; 56(7):1431-44. DOI: 10.1111/j.0014-3820.2002.tb01455.x. View

17.

Palumbi S, Baker C . Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales. Mol Biol Evol. 1994; 11(3):426-35. DOI: 10.1093/oxfordjournals.molbev.a040115. View

18.

Librado P, Rozas J . DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 2009; 25(11):1451-2. DOI: 10.1093/bioinformatics/btp187. View

19.

Baxevanis A, Kappas I, Abatzopoulos T . Molecular phylogenetics and asexuality in the brine shrimp Artemia. Mol Phylogenet Evol. 2006; 40(3):724-38. DOI: 10.1016/j.ympev.2006.04.010. View

20.

King J, Hanner R . Cryptic species in a "living fossil" lineage: taxonomic and phylogenetic relationships within the genus Lepidurus (Crustacea: Notostraca) in North America. Mol Phylogenet Evol. 1998; 10(1):23-36. DOI: 10.1006/mpev.1997.0470. View