» Articles » PMID: 19965774

Archiving Next Generation Sequencing Data

Overview
Specialty Biochemistry
Date 2009 Dec 8
PMID 19965774
Citations 68
Authors
Affiliations
Soon will be listed here.
Abstract

Next generation sequencing platforms are producing biological sequencing data in unprecedented amounts. The partners of the International Nucleotide Sequencing Database Collaboration, which includes the National Center for Biotechnology Information (NCBI), the European Bioinformatics Institute (EBI), and the DNA Data Bank of Japan (DDBJ), have established the Sequence Read Archive (SRA) to provide the scientific community with an archival destination for next generation data sets. The SRA is now accessible at http://www.ncbi.nlm.nih.gov/Traces/sra from NCBI, at http://www.ebi.ac.uk/ena from EBI and at http://www.ddbj.nig.ac.jp/sub/trace_sra-e.html from DDBJ. Users of these resources can obtain data sets deposited in any of the three SRA instances. Links and submission instructions are provided.

Citing Articles

Multiple graphical views for automatically generating SQL for the MycoDiversity DB; making fungal biodiversity studies accessible.

Martorelli I, Pooryousefi A, van Thiel H, Sicking F, Ramackers G, Merckx V Biodivers Data J. 2024; 12:e119660.

PMID: 38933486 PMC: 11199959. DOI: 10.3897/BDJ.12.e119660.


Biomedical Data Repository Concepts and Management Principles.

Lin D, McAuliffe M, Pruitt K, Gururaj A, Melchior C, Schmitt C Sci Data. 2024; 11(1):622.

PMID: 38871749 PMC: 11176378. DOI: 10.1038/s41597-024-03449-z.


Multi-omic analysis tools for microbial metabolites prediction.

Wu S, Zhou H, Chen D, Lu Y, Li Y, Qiao J Brief Bioinform. 2024; 25(4).

PMID: 38859767 PMC: 11165163. DOI: 10.1093/bib/bbae264.


Unraveling the role of cloud computing in health care system and biomedical sciences.

Sachdeva S, Bhatia S, Al Harrasi A, Shah Y, Anwer K, Philip A Heliyon. 2024; 10(7):e29044.

PMID: 38601602 PMC: 11004887. DOI: 10.1016/j.heliyon.2024.e29044.


An omics review and perspective of researches on intrahepatic cholestasis of pregnancy.

Wang M, Chen L, Li J, You Y, Qian Z, Liu J Front Endocrinol (Lausanne). 2024; 14:1267195.

PMID: 38260124 PMC: 10801044. DOI: 10.3389/fendo.2023.1267195.


References
1.
Wheeler D, Barrett T, Benson D, Bryant S, Canese K, Chetvernin V . Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2006; 35(Database issue):D5-12. PMC: 1781113. DOI: 10.1093/nar/gkl1031. View

2.
Wheeler D, Barrett T, Benson D, Bryant S, Canese K, Chetvernin V . Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2007; 36(Database issue):D13-21. PMC: 2238880. DOI: 10.1093/nar/gkm1000. View

3.
Sugawara H, Ikeo K, Fukuchi S, Gojobori T, Tateno Y . DDBJ dealing with mass data produced by the second generation sequencer. Nucleic Acids Res. 2008; 37(Database issue):D16-8. PMC: 2686496. DOI: 10.1093/nar/gkn724. View

4.
Cochrane G, Akhtar R, Bonfield J, Bower L, Demiralp F, Faruque N . Petabyte-scale innovations at the European Nucleotide Archive. Nucleic Acids Res. 2008; 37(Database issue):D19-25. PMC: 2686451. DOI: 10.1093/nar/gkn765. View

5.
Sayers E, Barrett T, Benson D, Bryant S, Canese K, Chetvernin V . Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2008; 37(Database issue):D5-15. PMC: 2686545. DOI: 10.1093/nar/gkn741. View