The Arabidopsis B-box Zinc Finger Family

Overview

Journal Plant Cell

Publisher Oxford University Press

Specialties Biology
Cell Biology

Date 2009 Nov 19

PMID 19920209

Citations 192

Authors

Rajnish Khanna

Brent Kronmiller

Don R Maszle

George Coupland

Magnus Holm

Takeshi Mizuno

Shu-Hsing Wu

Affiliations

Soon will be listed here.

Citing Articles

Identification of the BBX gene family in blueberry at different chromosome ploidy levels and fruit development and response under stress.

Xue Y, Chen J, Hao J, Bao X, Kuang L, Zhang D BMC Genomics. 2025; 26(1):100.

PMID: 39901109 PMC: 11792412. DOI: 10.1186/s12864-025-11273-x.

Genome-Wide Identification of - () Gene Family and the Potential Function of Under Salt Stress in .

Zhao Y, Xu J, Xu X, Liu H, Chang Q, Xu L Int J Mol Sci. 2025; 26(2).

PMID: 39859441 PMC: 11765704. DOI: 10.3390/ijms26020724.

A B-Box (BBX) Transcription Factor from Cucumber, CsCOL9 Positively Regulates Resistance of Host Plant to .

Xie S, Shi B, Miao M, Zhao C, Bai R, Yan F Int J Mol Sci. 2025; 26(1.

PMID: 39796180 PMC: 11720035. DOI: 10.3390/ijms26010324.

Overexpression of StBBX14 Enhances Cold Tolerance in Potato.

Zhang H, Chen M, Luo X, Song L, Li F Plants (Basel). 2025; 14(1.

PMID: 39795278 PMC: 11722690. DOI: 10.3390/plants14010018.

Molecular Functional and Transcriptome Analysis of Overexpression from Zicaitai ( var. ).

Fu M, Lu M, Guo J, Jiang S, Khan I, Karamat U Plants (Basel). 2024; 13(23).

PMID: 39683099 PMC: 11644720. DOI: 10.3390/plants13233306.

References

Quail P, Briggs W, Chory J, Hangarter R, Harberd N, Kendrick R . Spotlight on Phytochrome Nomenclature. Plant Cell. 1994; 6(4):468-471. PMC: 160449. DOI: 10.1105/tpc.6.4.468. View

Chang C, Li Y, Chen L, Chen W, Hsieh W, Shin J . LZF1, a HY5-regulated transcriptional factor, functions in Arabidopsis de-etiolation. Plant J. 2008; 54(2):205-19. DOI: 10.1111/j.1365-313X.2008.03401.x. View

Koornneef M, Hanhart C, van der Veen J . A genetic and physiological analysis of late flowering mutants in Arabidopsis thaliana. Mol Gen Genet. 1991; 229(1):57-66. DOI: 10.1007/BF00264213. View

Strayer C, Oyama T, Schultz T, Raman R, Somers D, Mas P . Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. Science. 2000; 289(5480):768-71. DOI: 10.1126/science.289.5480.768. View

Crooks G, Hon G, Chandonia J, Brenner S . WebLogo: a sequence logo generator. Genome Res. 2004; 14(6):1188-90. PMC: 419797. DOI: 10.1101/gr.849004. View

Schneider T, Stephens R . Sequence logos: a new way to display consensus sequences. Nucleic Acids Res. 1990; 18(20):6097-100. PMC: 332411. DOI: 10.1093/nar/18.20.6097. View

Bailey P, Martin C, Toledo-Ortiz G, Quail P, Huq E, Heim M . Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. Plant Cell. 2003; 15(11):2497-502. PMC: 540267. DOI: 10.1105/tpc.151140. View

Briggs W, Beck C, Cashmore A, Christie J, Hughes J, Jarillo J . The phototropin family of photoreceptors. Plant Cell. 2001; 13(5):993-7. PMC: 1464709. DOI: 10.1105/tpc.13.5.993. View

Edgar R . MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004; 32(5):1792-7. PMC: 390337. DOI: 10.1093/nar/gkh340. View

10.

Datta S, Johansson H, Hettiarachchi C, Irigoyen M, Desai M, Rubio V . LZF1/SALT TOLERANCE HOMOLOG3, an Arabidopsis B-box protein involved in light-dependent development and gene expression, undergoes COP1-mediated ubiquitination. Plant Cell. 2008; 20(9):2324-38. PMC: 2570732. DOI: 10.1105/tpc.108.061747. View

11.

Henikoff S, Henikoff J . Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci U S A. 1992; 89(22):10915-9. PMC: 50453. DOI: 10.1073/pnas.89.22.10915. View

12.

Stracke R, WERBER M, Weisshaar B . The R2R3-MYB gene family in Arabidopsis thaliana. Curr Opin Plant Biol. 2001; 4(5):447-56. DOI: 10.1016/s1369-5266(00)00199-0. View

13.

Yang L, Liu Z, Lu F, Dong A, Huang H . SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis. Plant J. 2006; 47(6):841-50. DOI: 10.1111/j.1365-313X.2006.02835.x. View

14.

LARKIN M, Blackshields G, Brown N, Chenna R, McGettigan P, McWilliam H . Clustal W and Clustal X version 2.0. Bioinformatics. 2007; 23(21):2947-8. DOI: 10.1093/bioinformatics/btm404. View

15.

Fujioka Y, Utsumi M, Ohba Y, Watanabe Y . Location of a possible miRNA processing site in SmD3/SmB nuclear bodies in Arabidopsis. Plant Cell Physiol. 2007; 48(9):1243-53. DOI: 10.1093/pcp/pcm099. View

16.

Datta S, Hettiarachchi C, Johansson H, Holm M . SALT TOLERANCE HOMOLOG2, a B-box protein in Arabidopsis that activates transcription and positively regulates light-mediated development. Plant Cell. 2007; 19(10):3242-55. PMC: 2174709. DOI: 10.1105/tpc.107.054791. View

17.

Yanagisawa S, Schmidt R . Diversity and similarity among recognition sequences of Dof transcription factors. Plant J. 1999; 17(2):209-14. DOI: 10.1046/j.1365-313x.1999.00363.x. View

18.

Holm M, Hardtke C, Gaudet R, Deng X . Identification of a structural motif that confers specific interaction with the WD40 repeat domain of Arabidopsis COP1. EMBO J. 2001; 20(1-2):118-27. PMC: 140188. DOI: 10.1093/emboj/20.1.118. View

19.

Huelsenbeck J, Ronquist F . MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 2001; 17(8):754-5. DOI: 10.1093/bioinformatics/17.8.754. View

20.

Kumagai T, Ito S, Nakamichi N, Niwa Y, Murakami M, Yamashino T . The common function of a novel subfamily of B-Box zinc finger proteins with reference to circadian-associated events in Arabidopsis thaliana. Biosci Biotechnol Biochem. 2008; 72(6):1539-49. DOI: 10.1271/bbb.80041. View