» Articles » PMID: 19834511

Modifications of RNA Polymerase II Are Pivotal in Regulating Gene Expression States

Overview
Journal EMBO Rep
Specialty Molecular Biology
Date 2009 Oct 17
PMID 19834511
Citations 89
Authors
Affiliations
Soon will be listed here.
Abstract

The regulation of gene expression programmes is essential for the generation of diverse cell types during development and for adaptation to environmental signals. RNA polymerase II (RNAPII) transcribes genetic information and coordinates the recruitment of accessory proteins that are responsible for the establishment of active chromatin states and transcript maturation. RNAPII is post-translationally modified at active genes during transcription initiation, elongation and termination, and thereby recruits specific histone and RNA modifiers. RNAPII complexes are also located at silent genes in promoter-proximal paused configurations that provide dynamic transcriptional regulation downstream from initiation. In embryonic stem cells, silent developmental regulator genes that are repressed by Polycomb are associated with a form of RNAPII that can elongate through coding regions but that lacks the post-translational modifications that are important for coupling RNA synthesis to co-transcriptional maturation. Here, we discuss the mechanisms through which the transcription of silent genes might be dissociated from productive expression, and the sophisticated interplay between the transcriptional machinery, Polycomb repression and RNA processing.

Citing Articles

Cocaine-Induced DNA-Dependent Protein Kinase Relieves RNAP II Pausing by Promoting TRIM28 Phosphorylation and RNAP II Hyperphosphorylation to Enhance HIV Transcription.

Sharma A, Tyagi P, Khumallambam M, Tyagi M Cells. 2024; 13(23).

PMID: 39682697 PMC: 11640508. DOI: 10.3390/cells13231950.


Cocaine-induced DNA-PK relieves RNAP II pausing by promoting TRIM28 phosphorylation.

Sharma A, Tyagi P, Khumallambam M, Tyagi M bioRxiv. 2024; .

PMID: 39229050 PMC: 11370412. DOI: 10.1101/2024.08.19.608673.


Assessing the Role of Post-Translational Modifications of Mitochondrial RNA Polymerase.

Platz K, Rudisel E, Paluch K, Laurin T, Dittenhafer-Reed K Int J Mol Sci. 2023; 24(22).

PMID: 38003238 PMC: 10671485. DOI: 10.3390/ijms242216050.


Catalytic activity of the Bin3/MePCE methyltransferase domain is dispensable for 7SK snRNP function in Drosophila melanogaster.

Palumbo R, Yang Y, Feigon J, Hanes S Genetics. 2023; 226(1).

PMID: 37982586 PMC: 10763541. DOI: 10.1093/genetics/iyad203.


Identification and characterization of RNA pentaloop sequence families.

Saon M, Kirkpatrick C, Znosko B NAR Genom Bioinform. 2023; 5(1):lqac102.

PMID: 36632613 PMC: 9830547. DOI: 10.1093/nargab/lqac102.


References
1.
Spilianakis C, Kretsovali A, Agalioti T, Makatounakis T, Thanos D, Papamatheakis J . CIITA regulates transcription onset viaSer5-phosphorylation of RNA Pol II. EMBO J. 2003; 22(19):5125-36. PMC: 204479. DOI: 10.1093/emboj/cdg496. View

2.
Hargreaves D, Horng T, Medzhitov R . Control of inducible gene expression by signal-dependent transcriptional elongation. Cell. 2009; 138(1):129-45. PMC: 2828818. DOI: 10.1016/j.cell.2009.05.047. View

3.
Jorgensen H, Giadrossi S, Casanova M, Endoh M, Koseki H, Brockdorff N . Stem cells primed for action: polycomb repressive complexes restrain the expression of lineage-specific regulators in embryonic stem cells. Cell Cycle. 2006; 5(13):1411-4. DOI: 10.4161/cc.5.13.2927. View

4.
Ku M, Koche R, Rheinbay E, Mendenhall E, Endoh M, Mikkelsen T . Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains. PLoS Genet. 2008; 4(10):e1000242. PMC: 2567431. DOI: 10.1371/journal.pgen.1000242. View

5.
Mito Y, Henikoff J, Henikoff S . Histone replacement marks the boundaries of cis-regulatory domains. Science. 2007; 315(5817):1408-11. DOI: 10.1126/science.1134004. View