Bacterial Degradation of Aromatic Compounds

Overview

Journal Int J Environ Res Public Health

Publisher MDPI

Specialties Environmental Health
Public Health

Date 2009 May 15

PMID 19440284

Citations 178

Authors

Jong-Su Seo

Young-Soo Keum

Qing X Li

Affiliations

Soon will be listed here.

Abstract

Aromatic compounds are among the most prevalent and persistent pollutants in the environment. Petroleum-contaminated soil and sediment commonly contain a mixture of polycyclic aromatic hydrocarbons (PAHs) and heterocyclic aromatics. Aromatics derived from industrial activities often have functional groups such as alkyls, halogens and nitro groups. Biodegradation is a major mechanism of removal of organic pollutants from a contaminated site. This review focuses on bacterial degradation pathways of selected aromatic compounds. Catabolic pathways of naphthalene, fluorene, phenanthrene, fluoranthene, pyrene, and benzo[a]pyrene are described in detail. Bacterial catabolism of the heterocycles dibenzofuran, carbazole, dibenzothiophene, and dibenzodioxin is discussed. Bacterial catabolism of alkylated PAHs is summarized, followed by a brief discussion of proteomics and metabolomics as powerful tools for elucidation of biodegradation mechanisms.

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References

Moody J, Freeman J, Doerge D, Cerniglia C . Degradation of phenanthrene and anthracene by cell suspensions of Mycobacterium sp. strain PYR-1. Appl Environ Microbiol. 2001; 67(4):1476-83. PMC: 92757. DOI: 10.1128/AEM.67.4.1476-1483.2001. View

Grifoll M, Selifonov S, Chapman P . Transformation of Substituted Fluorenes and Fluorene Analogs by Pseudomonas sp. Strain F274. Appl Environ Microbiol. 1995; 61(9):3490-3. PMC: 1388586. DOI: 10.1128/aem.61.9.3490-3493.1995. View

Gai Z, Yu B, Li L, Wang Y, Ma C, Feng J . Cometabolic degradation of dibenzofuran and dibenzothiophene by a newly isolated carbazole-degrading Sphingomonas sp. strain. Appl Environ Microbiol. 2007; 73(9):2832-8. PMC: 1892858. DOI: 10.1128/AEM.02704-06. View

Guo W, Li D, Tao Y, Gao P, Hu J . Isolation and description of a stable carbazole-degrading microbial consortium consisting of Chryseobacterium sp. NCY and Achromobacter sp. NCW. Curr Microbiol. 2008; 57(3):251-7. DOI: 10.1007/s00284-008-9185-x. View

Baboshin M, Akimov V, Baskunov B, Born T, Khan S, Golovleva L . Conversion of polycyclic aromatic hydrocarbons by Sphingomonas sp. VKM B-2434. Biodegradation. 2007; 19(4):567-76. DOI: 10.1007/s10532-007-9162-2. View

Goyal A, Zylstra G . Molecular cloning of novel genes for polycyclic aromatic hydrocarbon degradation from Comamonas testosteroni GZ39. Appl Environ Microbiol. 1996; 62(1):230-6. PMC: 167791. DOI: 10.1128/aem.62.1.230-236.1996. View

Yang Z, Xia C, Zhang Q, Chen J, Liang X . Catalytic detoxification of polychlorinated dibenzo-p-dioxins and polychlorinated dibenzofurans in fly ash. Waste Manag. 2006; 27(4):588-92. DOI: 10.1016/j.wasman.2006.02.019. View

Parnell J, Park J, Denef V, Tsoi T, Hashsham S, Quensen 3rd J . Coping with polychlorinated biphenyl (PCB) toxicity: Physiological and genome-wide responses of Burkholderia xenovorans LB400 to PCB-mediated stress. Appl Environ Microbiol. 2006; 72(10):6607-14. PMC: 1610328. DOI: 10.1128/AEM.01129-06. View

Pinyakong O, Habe H, Supaka N, Pinpanichkarn P, Juntongjin K, Yoshida T . Identification of novel metabolites in the degradation of phenanthrene by Sphingomonas sp. strain P2. FEMS Microbiol Lett. 2000; 191(1):115-21. DOI: 10.1111/j.1574-6968.2000.tb09327.x. View

10.

Mallick S, Chatterjee S, Dutta T . A novel degradation pathway in the assimilation of phenanthrene by Staphylococcus sp. strain PN/Y via meta-cleavage of 2-hydroxy-1-naphthoic acid: formation of trans-2,3-dioxo-5-(2'-hydroxyphenyl)-pent-4-enoic acid. Microbiology (Reading). 2007; 153(Pt 7):2104-2115. DOI: 10.1099/mic.0.2006/004218-0. View

11.

Vila J, Lopez Z, Sabate J, Minguillon C, Solanas A, Grifoll M . Identification of a novel metabolite in the degradation of pyrene by Mycobacterium sp. strain AP1: actions of the isolate on two- and three-ring polycyclic aromatic hydrocarbons. Appl Environ Microbiol. 2001; 67(12):5497-505. PMC: 93335. DOI: 10.1128/AEM.67.12.5497-5505.2001. View

12.

Heitkamp M, Franklin W, Cerniglia C . Microbial metabolism of polycyclic aromatic hydrocarbons: isolation and characterization of a pyrene-degrading bacterium. Appl Environ Microbiol. 1988; 54(10):2549-55. PMC: 204312. DOI: 10.1128/aem.54.10.2549-2555.1988. View

13.

Nam J, Nojiri H, Noguchi H, Uchimura H, Yoshida T, Habe H . Purification and characterization of carbazole 1,9a-dioxygenase, a three-component dioxygenase system of Pseudomonas resinovorans strain CA10. Appl Environ Microbiol. 2002; 68(12):5882-90. PMC: 134387. DOI: 10.1128/AEM.68.12.5882-5890.2002. View

14.

Chang B, Chiu T, Yuan S . Dechlorination of polychlorinated biphenyl congeners by anaerobic microorganisms from river sediment. Water Environ Res. 2006; 78(7):764-9. DOI: 10.2175/106143006x107380. View

15.

Tsuda H, Hagiwara A, Shibata M, Ohshima M, Ito N . Carcinogenic effect of carbazole in the liver of (C57BL/6N x C3H/HeN)F1 mice. J Natl Cancer Inst. 1982; 69(6):1383-9. View

16.

Grifoll M, Selifonov S, Gatlin C, Chapman P . Actions of a versatile fluorene-degrading bacterial isolate on polycyclic aromatic compounds. Appl Environ Microbiol. 1995; 61(10):3711-23. PMC: 167670. DOI: 10.1128/aem.61.10.3711-3723.1995. View

17.

Fortnagel P, Harms H, Wittich R, Krohn S, Meyer H, Sinnwell V . Metabolism of Dibenzofuran by Pseudomonas sp. Strain HH69 and the Mixed Culture HH27. Appl Environ Microbiol. 1990; 56(4):1148-56. PMC: 184358. DOI: 10.1128/aem.56.4.1148-1156.1990. View

18.

Kim Y, Cho K, Yun S, Kim J, Kwon K, Yoo J . Analysis of aromatic catabolic pathways in Pseudomonas putida KT 2440 using a combined proteomic approach: 2-DE/MS and cleavable isotope-coded affinity tag analysis. Proteomics. 2006; 6(4):1301-18. DOI: 10.1002/pmic.200500329. View

19.

Habe H, Chung J, Kato H, Ayabe Y, Kasuga K, Yoshida T . Characterization of the upper pathway genes for fluorene metabolism in Terrabacter sp. strain DBF63. J Bacteriol. 2004; 186(17):5938-44. PMC: 516849. DOI: 10.1128/JB.186.17.5938-5944.2004. View

20.

Spormann A, Widdel F . Metabolism of alkylbenzenes, alkanes, and other hydrocarbons in anaerobic bacteria. Biodegradation. 2001; 11(2-3):85-105. DOI: 10.1023/a:1011122631799. View