Yamaura K, Takemata N, Kariya M, Osaka A, Ishino S, Yamauchi M
Nat Commun. 2025; 16(1):1312.
PMID: 39971902
PMC: 11840125.
DOI: 10.1038/s41467-025-56197-y.
Chen R, Stoeber S, Nodelman I, Chen H, Yang L, Bowman G
bioRxiv. 2025; .
PMID: 39868261
PMC: 11760725.
DOI: 10.1101/2025.01.17.633597.
Bandbe C, Patil K, Pathan E
World J Microbiol Biotechnol. 2024; 40(12):400.
PMID: 39617818
DOI: 10.1007/s11274-024-04198-2.
Hikmat W, Sievers A, Hausmann M, Hildenbrand G
Genes (Basel). 2024; 15(10).
PMID: 39457371
PMC: 11506876.
DOI: 10.3390/genes15101247.
Zhu C, Cai S, Liu P, Chen D, Zhou J, Zhuo M
Biotechnol Notes. 2024; 4:127-134.
PMID: 39416914
PMC: 11446396.
DOI: 10.1016/j.biotno.2023.12.004.
Promoters in Pichia pastoris: A Toolbox for Fine-Tuned Gene Expression.
Arjmand S
Methods Mol Biol. 2024; 2844:159-178.
PMID: 39068339
DOI: 10.1007/978-1-0716-4063-0_11.
The importance of DNA sequence for nucleosome positioning in transcriptional regulation.
Sahrhage M, Paul N, Beissbarth T, Haubrock M
Life Sci Alliance. 2024; 7(8).
PMID: 38830772
PMC: 11147951.
DOI: 10.26508/lsa.202302380.
Nucleosomal DNA has topological memory.
Segura J, Diaz-Ingelmo O, Martinez-Garcia B, Ayats-Fraile A, Nikolaou C, Roca J
Nat Commun. 2024; 15(1):4526.
PMID: 38806488
PMC: 11133463.
DOI: 10.1038/s41467-024-49023-4.
Antibiotic-Free Gene Vectors: A 25-Year Journey to Clinical Trials.
Marie C, Scherman D
Genes (Basel). 2024; 15(3).
PMID: 38540320
PMC: 10970329.
DOI: 10.3390/genes15030261.
Systematic Comparison of Atomistic Force Fields for the Mechanical Properties of Double-Stranded DNA.
Roldan-Pinero C, Luengo-Marquez J, Assenza S, Perez R
J Chem Theory Comput. 2024; 20(5):2261-2272.
PMID: 38411091
PMC: 10938644.
DOI: 10.1021/acs.jctc.3c01089.
Quantitative analysis of transcription start site selection reveals control by DNA sequence, RNA polymerase II activity and NTP levels.
Zhu Y, Vvedenskaya I, Sze S, Nickels B, Kaplan C
Nat Struct Mol Biol. 2024; 31(1):190-202.
PMID: 38177677
PMC: 10928753.
DOI: 10.1038/s41594-023-01171-9.
Predictions of DNA mechanical properties at a genomic scale reveal potentially new functional roles of DNA flexibility.
Back G, Walther D
NAR Genom Bioinform. 2023; 5(4):lqad097.
PMID: 37954573
PMC: 10632188.
DOI: 10.1093/nargab/lqad097.
Poly(dA:dT) Tracts Differentially Modulate Nucleosome Remodeling Activity of RSC and ISW1a Complexes, Exerting Tract Orientation-Dependent and -Independent Effects.
Amigo R, Raiqueo F, Tarifeno E, Farkas C, Gutierrez J
Int J Mol Sci. 2023; 24(20).
PMID: 37894925
PMC: 10607297.
DOI: 10.3390/ijms242015245.
Chromatin analysis of adult pluripotent stem cells reveals a unique stemness maintenance strategy.
Poulet A, Kratkiewicz A, Li D, van Wolfswinkel J
Sci Adv. 2023; 9(40):eadh4887.
PMID: 37801496
PMC: 10558129.
DOI: 10.1126/sciadv.adh4887.
Mechanical codes of chemical-scale specificity in DNA motifs.
Chen Y, Yang H, Chu J
Chem Sci. 2023; 14(37):10155-10166.
PMID: 37772098
PMC: 10529945.
DOI: 10.1039/d3sc01671d.
Sequence dependencies and mutation rates of localized mutational processes in cancer.
Poulsgaard G, Sorensen S, Juul R, Nielsen M, Pedersen J
Genome Med. 2023; 15(1):63.
PMID: 37592287
PMC: 10436389.
DOI: 10.1186/s13073-023-01217-z.
Functional characterization of the Komagataella phaffii 1033 gene promoter and transcriptional terminator.
Robainas-Del-Pino Y, Viader-Salvado J, Herrera-Estala A, Guerrero-Olazaran M
World J Microbiol Biotechnol. 2023; 39(9):246.
PMID: 37420160
DOI: 10.1007/s11274-023-03682-5.
Identification of transcriptional regulatory variants in pig duodenum, liver, and muscle tissues.
Crespo-Piazuelo D, Acloque H, Gonzalez-Rodriguez O, Mongellaz M, Mercat M, Bink M
Gigascience. 2023; 12.
PMID: 37354463
PMC: 10290502.
DOI: 10.1093/gigascience/giad042.
Specific DNA binding of archaeal histones HMfA and HMfB.
Erkelens A, Henneman B, van der Valk R, Kirolos N, Dame R
Front Microbiol. 2023; 14:1166608.
PMID: 37143534
PMC: 10151503.
DOI: 10.3389/fmicb.2023.1166608.
Functional analysis of a random-sequence chromosome reveals a high level and the molecular nature of transcriptional noise in yeast cells.
Gvozdenov Z, Barcutean Z, Struhl K
Mol Cell. 2023; 83(11):1786-1797.e5.
PMID: 37137302
PMC: 10247422.
DOI: 10.1016/j.molcel.2023.04.010.