Domains in Microbial Beta-1, 4-glycanases: Sequence Conservation, Function, and Enzyme Families

Overview

Journal Microbiol Rev

Publisher American Society for Microbiology

Specialty Microbiology

Date 1991 Jun 11

PMID 1886523

Citations 246

Authors

N R Gilkes

B Henrissat

D G Kilburn

R C Miller Jr

R A Warren

Affiliations

Soon will be listed here.

Abstract

Several types of domain occur in beta-1, 4-glycanases. The best characterized of these are the catalytic domains and the cellulose-binding domains. The domains may be joined by linker sequences rich in proline or hydroxyamino acids or both. Some of the enzymes contain repeated sequences up to 150 amino acids in length. The enzymes can be grouped into families on the basis of sequence similarities between the catalytic domains. There are sequence similarities between the cellulose-binding domains, of which two types have been identified, and also between some domains of unknown function. The beta-1, 4-glycanases appear to have arisen by the shuffling of a relatively small number of progenitor sequences.

Citing Articles

Novel Design of an α-Amylase with an N-Terminal CBM20 in Improves Binding and Processing of a Broad Range of Starches.

Sidar A, Voshol G, Vijgenboom E, Punt P Molecules. 2023; 28(13).

PMID: 37446690 PMC: 10343422. DOI: 10.3390/molecules28135033.

Duplication of horizontally acquired GH5_2 enzymes played a central role in the evolution of longhorned beetles.

Shin N, Doucet D, Pauchet Y Mol Biol Evol. 2022; .

PMID: 35763818 PMC: 9246334. DOI: 10.1093/molbev/msac128.

The Role of Glycoside Hydrolases in Phytopathogenic Fungi and Oomycetes Virulence.

Rafiei V, Velez H, Tzelepis G Int J Mol Sci. 2021; 22(17).

PMID: 34502268 PMC: 8431085. DOI: 10.3390/ijms22179359.

Phytophthora capsici CBM1-containing protein CBP3 is an apoplastic effector with plant immunity-inducing activity.

Yin Z, Wang N, Duan W, Pi L, Shen D, Dou D Mol Plant Pathol. 2021; 22(11):1358-1369.

PMID: 34382319 PMC: 8518581. DOI: 10.1111/mpp.13116.

Back to the Salt Mines: Genome and Transcriptome Comparisons of the Halophilic Fungus and Its Halotolerant Relative .

Tafer H, Poyntner C, Lopandic K, Sterflinger K, Pinar G Genes (Basel). 2019; 10(5).

PMID: 31137536 PMC: 6563132. DOI: 10.3390/genes10050381.

References

ONeill G, Goh S, Warren R, Kilburn D, Miller Jr R . Structure of the gene encoding the exoglucanase of Cellulomonas fimi. Gene. 1986; 44(2-3):325-30. DOI: 10.1016/0378-1119(86)90197-6. View

Wong W, Gerhard B, Guo Z, Kilburn D, Warren A, Miller Jr R . Characterization and structure of an endoglucanase gene cenA of Cellulomonas fimi. Gene. 1986; 44(2-3):315-24. DOI: 10.1016/0378-1119(86)90196-4. View

Lipman D, Altschul S, Kececioglu J . A tool for multiple sequence alignment. Proc Natl Acad Sci U S A. 1989; 86(12):4412-5. PMC: 287279. DOI: 10.1073/pnas.86.12.4412. View

Sims P, James C, Broda P . The identification, molecular cloning and characterisation of a gene from Phanerochaete chrysosporium that shows strong homology to the exo-cellobiohydrolase I gene from Trichoderma reesei. Gene. 1988; 74(2):411-22. DOI: 10.1016/0378-1119(88)90174-6. View

Saloheimo M, Lehtovaara P, Penttila M, Teeri T, Stahlberg J, Johansson G . EGIII, a new endoglucanase from Trichoderma reesei: the characterization of both gene and enzyme. Gene. 1988; 63(1):11-22. DOI: 10.1016/0378-1119(88)90541-0. View

Stahlberg J, Johansson G, Pettersson G . A binding-site-deficient, catalytically active, core protein of endoglucanase III from the culture filtrate of Trichoderma reesei. Eur J Biochem. 1988; 173(1):179-83. DOI: 10.1111/j.1432-1033.1988.tb13982.x. View

Teeri T, Lehtovaara P, Kauppinen S, Salovuori I, Knowles J . Homologous domains in Trichoderma reesei cellulolytic enzymes: gene sequence and expression of cellobiohydrolase II. Gene. 1987; 51(1):43-52. DOI: 10.1016/0378-1119(87)90472-0. View

Penttila M, Lehtovaara P, Nevalainen H, Bhikhabhai R, Knowles J . Homology between cellulase genes of Trichoderma reesei: complete nucleotide sequence of the endoglucanase I gene. Gene. 1986; 45(3):253-63. DOI: 10.1016/0378-1119(86)90023-5. View

Tomme P, van Tilbeurgh H, Pettersson G, Van Damme J, Vandekerckhove J, Knowles J . Studies of the cellulolytic system of Trichoderma reesei QM 9414. Analysis of domain function in two cellobiohydrolases by limited proteolysis. Eur J Biochem. 1988; 170(3):575-81. DOI: 10.1111/j.1432-1033.1988.tb13736.x. View

10.

Johnson L, Cheetham J, McLaughlin P, Acharya K, Barford D, Phillips D . Protein-oligosaccharide interactions: lysozyme, phosphorylase, amylases. Curr Top Microbiol Immunol. 1988; 139:81-134. DOI: 10.1007/978-3-642-46641-0_4. View

11.

Quiocho F . Carbohydrate-binding proteins: tertiary structures and protein-sugar interactions. Annu Rev Biochem. 1986; 55:287-315. DOI: 10.1146/annurev.bi.55.070186.001443. View

12.

Fukumori F, Kudo T, Sashihara N, Nagata Y, Ito K, Horikoshi K . The third cellulase of alkalophilic Bacillus sp. strain N-4: evolutionary relationships within the cel gene family. Gene. 1989; 76(2):289-98. DOI: 10.1016/0378-1119(89)90169-8. View

13.

Hall J, Gilbert H . The nucleotide sequence of a carboxymethylcellulase gene from Pseudomonas fluorescens subsp. cellulosa. Mol Gen Genet. 1988; 213(1):112-7. DOI: 10.1007/BF00333406. View

14.

Guiseppi A, Cami B, Aymeric J, Ball G, Creuzet N . Homology between endoglucanase Z of Erwinia chrysanthemi and endoglucanases of Bacillus subtilis and alkalophilic Bacillus. Mol Microbiol. 1988; 2(1):159-64. DOI: 10.1111/j.1365-2958.1988.tb00017.x. View

15.

Faure E, Bagnara C, Belaich A, Belaich J . Cloning and expression of two cellulase genes of Clostridium cellulolyticum in Escherichia coli. Gene. 1988; 65(1):51-8. DOI: 10.1016/0378-1119(88)90416-7. View

16.

MACKAY R, Lo A, Willick G, Zuker M, Baird S, Dove M . Structure of a Bacillus subtilis endo-beta-1,4-glucanase gene. Nucleic Acids Res. 1986; 14(22):9159-70. PMC: 311936. DOI: 10.1093/nar/14.22.9159. View

17.

Joliff G, Beguin P, Aubert J . Nucleotide sequence of the cellulase gene celD encoding endoglucanase D of Clostridium thermocellum. Nucleic Acids Res. 1986; 14(21):8605-13. PMC: 311880. DOI: 10.1093/nar/14.21.8605. View

18.

Robson L, Chambliss G . Cloning of the Bacillus subtilis DLG beta-1,4-glucanase gene and its expression in Escherichia coli and B. subtilis. J Bacteriol. 1986; 165(2):612-9. PMC: 214463. DOI: 10.1128/jb.165.2.612-619.1986. View

19.

Ruoslahti E . Fibronectin and its receptors. Annu Rev Biochem. 1988; 57:375-413. DOI: 10.1146/annurev.bi.57.070188.002111. View

20.

Katsuragi N, Takizawa N, Murooka Y . Entire nucleotide sequence of the pullulanase gene of Klebsiella aerogenes W70. J Bacteriol. 1987; 169(5):2301-6. PMC: 212163. DOI: 10.1128/jb.169.5.2301-2306.1987. View