» Articles » PMID: 18787134

Species-specific Transcription in Mice Carrying Human Chromosome 21

Overview
Journal Science
Specialty Science
Date 2008 Sep 13
PMID 18787134
Citations 169
Authors
Affiliations
Soon will be listed here.
Abstract

Homologous sets of transcription factors direct conserved tissue-specific gene expression, yet transcription factor-binding events diverge rapidly between closely related species. We used hepatocytes from an aneuploid mouse strain carrying human chromosome 21 to determine, on a chromosomal scale, whether interspecies differences in transcriptional regulation are primarily directed by human genetic sequence or mouse nuclear environment. Virtually all transcription factor-binding locations, landmarks of transcription initiation, and the resulting gene expression observed in human hepatocytes were recapitulated across the entire human chromosome 21 in the mouse hepatocyte nucleus. Thus, in homologous tissues, genetic sequence is largely responsible for directing transcriptional programs; interspecies differences in epigenetic machinery, cellular environment, and transcription factors themselves play secondary roles.

Citing Articles

Parkinson's disease models and death signaling: what do we know until now?.

Pedrao L, Medeiros P, Leandro E, Falquetto B Front Neuroanat. 2024; 18:1419108.

PMID: 39533977 PMC: 11555652. DOI: 10.3389/fnana.2024.1419108.


Understanding species-specific and conserved RNA-protein interactions in vivo and in vitro.

Harris S, Alexis M, Giri G, Cavazos Jr F, Hu Y, Murn J Nat Commun. 2024; 15(1):8400.

PMID: 39333159 PMC: 11436793. DOI: 10.1038/s41467-024-52231-7.


Gapped-kmer sequence modeling robustly identifies regulatory vocabularies and distal enhancers conserved between evolutionarily distant mammals.

Oh J, Beer M Nat Commun. 2024; 15(1):6464.

PMID: 39085231 PMC: 11291912. DOI: 10.1038/s41467-024-50708-z.


Dissecting the sequence and structural determinants guiding m6A deposition and evolution via inter- and intra-species hybrids.

Shachar R, Dierks D, Garcia-Campos M, Uzonyi A, Toth U, Rossmanith W Genome Biol. 2024; 25(1):48.

PMID: 38360609 PMC: 10870504. DOI: 10.1186/s13059-024-03182-1.


Understanding species-specific and conserved RNA-protein interactions and .

Harris S, Alexis M, Giri G, Cavazos F, Murn J, Aleman M bioRxiv. 2024; .

PMID: 38352439 PMC: 10862761. DOI: 10.1101/2024.01.29.577729.


References
1.
Borneman A, Gianoulis T, Zhang Z, Yu H, Rozowsky J, Seringhaus M . Divergence of transcription factor binding sites across related yeast species. Science. 2007; 317(5839):815-9. DOI: 10.1126/science.1140748. View

2.
Hoekstra H, Coyne J . The locus of evolution: evo devo and the genetics of adaptation. Evolution. 2007; 61(5):995-1016. DOI: 10.1111/j.1558-5646.2007.00105.x. View

3.
Wray G . The evolutionary significance of cis-regulatory mutations. Nat Rev Genet. 2007; 8(3):206-16. DOI: 10.1038/nrg2063. View

4.
Cereghini S . Liver-enriched transcription factors and hepatocyte differentiation. FASEB J. 1996; 10(2):267-82. View

5.
Kampa D, Cheng J, Kapranov P, Yamanaka M, Brubaker S, Cawley S . Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22. Genome Res. 2004; 14(3):331-42. PMC: 353210. DOI: 10.1101/gr.2094104. View