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Dynamics of Voltage Profile in Enzymatic Ion Transporters, Demonstrated in Electrokinetics of Proton Pumping Rhodopsin

Overview
Journal Biophys J
Publisher Cell Press
Specialty Biophysics
Date 2008 Jul 16
PMID 18621842
Citations 5
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Abstract

H(+)-pumping rhodopsins mediate a primordial conversion of light to metabolic energy. Bacteriorhodopsin from Halobacterium salinarium is the first identified and (biochemically) best-studied H(+)-pumping rhodopsin. The electrical properties of H(+)-pumping rhodopsins, however, are known in more detail for the homolog Acetabularia rhodopsin, isolated from the eukaryotic green alga Acetabularia acetabulum. Based on data from Acetabularia rhodopsin we present a general reaction kinetic model of H(+)-pumping rhodopsins with only seven independent parameters, which fits the kinetic properties of photocurrents as functions of light, transmembrane voltage, internal and external pH, and time. The model describes fast photoisomerization of retinal with simultaneous H(+) transfer to an H(+) acceptor, reprotonation of retinal from the intracellular face via an H(+) donor, and proton release to the extracellular space via an H(+) release complex. The voltage sensitivities of the individual reaction steps and their temporal changes are treated here by a novel approach, whereby--as in an Ohmic voltage divider--the effective portions of the total transmembrane voltage decrease with the relative velocities of the individual reaction steps. This analysis quantitatively infers dynamic changes of the voltage profile and of the pK values of the H(+)-binding sites involved.

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References
1.
Heyse S, Ernst O, Dienes Z, Hofmann K, Vogel H . Incorporation of rhodopsin in laterally structured supported membranes: observation of transducin activation with spatially and time-resolved surface plasmon resonance. Biochemistry. 1998; 37(2):507-22. DOI: 10.1021/bi971564r. View

2.
Zhang J, Kamenev A, Shklovskii B . Conductance of ion channels and nanopores with charged walls: a toy model. Phys Rev Lett. 2005; 95(14):148101. DOI: 10.1103/PhysRevLett.95.148101. View

3.
Luecke H, Schobert B, Richter H, Cartailler J, Lanyi J . Structural changes in bacteriorhodopsin during ion transport at 2 angstrom resolution. Science. 1999; 286(5438):255-61. DOI: 10.1126/science.286.5438.255. View

4.
Jogini V, Roux B . Dynamics of the Kv1.2 voltage-gated K+ channel in a membrane environment. Biophys J. 2007; 93(9):3070-82. PMC: 2025645. DOI: 10.1529/biophysj.107.112540. View

5.
Grossfield A, Feller S, Pitman M . Convergence of molecular dynamics simulations of membrane proteins. Proteins. 2007; 67(1):31-40. DOI: 10.1002/prot.21308. View