Das M, Hile S, Brewster J, Boer J, Bezalel-Buch R, Guo Q
Nucleic Acids Res. 2024; 53(3).
PMID: 39727171
PMC: 11797062.
DOI: 10.1093/nar/gkae1254.
Morales-Juarez D, Jackson S
NPJ Precis Oncol. 2022; 6(1):85.
PMID: 36379964
PMC: 9666358.
DOI: 10.1038/s41698-022-00319-y.
Ait Saada A, Costa A, Sheng Z, Guo W, Haber J, Lobachev K
Nucleic Acids Res. 2021; 49(7):3932-3947.
PMID: 33772579
PMC: 8053094.
DOI: 10.1093/nar/gkab168.
Poggi L, Richard G
Microbiol Mol Biol Rev. 2020; 85(1).
PMID: 33361270
PMC: 8549851.
DOI: 10.1128/MMBR.00110-20.
van Wietmarschen N, Sridharan S, Nathan W, Tubbs A, Chan E, Callen E
Nature. 2020; 586(7828):292-298.
PMID: 32999459
PMC: 8916167.
DOI: 10.1038/s41586-020-2769-8.
The role of fork stalling and DNA structures in causing chromosome fragility.
Kaushal S, Freudenreich C
Genes Chromosomes Cancer. 2018; 58(5):270-283.
PMID: 30536896
PMC: 7083089.
DOI: 10.1002/gcc.22721.
A strong structural correlation between short inverted repeat sequences and the polyadenylation signal in yeast and nucleosome exclusion by these inverted repeats.
Miura O, Ogake T, Yoneyama H, Kikuchi Y, Ohyama T
Curr Genet. 2018; 65(2):575-590.
PMID: 30498953
PMC: 6420913.
DOI: 10.1007/s00294-018-0907-8.
Cis- and Trans-Modifiers of Repeat Expansions: Blending Model Systems with Human Genetics.
McGinty R, Mirkin S
Trends Genet. 2018; 34(6):448-465.
PMID: 29567336
PMC: 5959756.
DOI: 10.1016/j.tig.2018.02.005.
Fluorescently labeled circular DNA molecules for DNA topology and topoisomerases.
Gu M, Berrido A, Gonzalez W, Miksovska J, Chambers J, Leng F
Sci Rep. 2016; 6:36006.
PMID: 27796331
PMC: 5087112.
DOI: 10.1038/srep36006.
Topological Behavior of Plasmid DNA.
Higgins N, Vologodskii A
Microbiol Spectr. 2015; 3(2).
PMID: 26104708
PMC: 4480603.
DOI: 10.1128/microbiolspec.PLAS-0036-2014.
Analysis of the t(3;8) of hereditary renal cell carcinoma: a palindrome-mediated translocation.
Kato T, Franconi C, Sheridan M, Hacker A, Inagakai H, Glover T
Cancer Genet. 2014; 207(4):133-40.
PMID: 24813807
PMC: 4102306.
DOI: 10.1016/j.cancergen.2014.03.004.
DNA synthesis by Pol η promotes fragile site stability by preventing under-replicated DNA in mitosis.
Bergoglio V, Boyer A, Walsh E, Naim V, Legube G, Lee M
J Cell Biol. 2013; 201(3):395-408.
PMID: 23609533
PMC: 3639397.
DOI: 10.1083/jcb.201207066.
Mechanism of replicative DNA polymerase delta pausing and a potential role for DNA polymerase kappa in common fragile site replication.
Walsh E, Wang X, Lee M, Eckert K
J Mol Biol. 2012; 425(2):232-43.
PMID: 23174185
PMC: 3540124.
DOI: 10.1016/j.jmb.2012.11.016.
Self-catalyzed site-specific depurination of G residues mediated by cruciform extrusion in closed circular DNA plasmids.
Amosova O, Kumar V, Deutsch A, Fresco J
J Biol Chem. 2011; 286(42):36322-30.
PMID: 21868375
PMC: 3196133.
DOI: 10.1074/jbc.M111.272112.
Folded DNA in action: hairpin formation and biological functions in prokaryotes.
Bikard D, Loot C, Baharoglu Z, Mazel D
Microbiol Mol Biol Rev. 2010; 74(4):570-88.
PMID: 21119018
PMC: 3008174.
DOI: 10.1128/MMBR.00026-10.
The role of supercoiling in transcriptional control of MYC and its importance in molecular therapeutics.
Brooks T, Hurley L
Nat Rev Cancer. 2009; 9(12):849-61.
PMID: 19907434
DOI: 10.1038/nrc2733.
Chromosomal instability mediated by non-B DNA: cruciform conformation and not DNA sequence is responsible for recurrent translocation in humans.
Inagaki H, Ohye T, Kogo H, Kato T, Bolor H, Taniguchi M
Genome Res. 2008; 19(2):191-8.
PMID: 18997000
PMC: 2652202.
DOI: 10.1101/gr.079244.108.
Chemical mapping of cytosines enzymatically flipped out of the DNA helix.
Daujotyte D, Liutkeviciute Z, Tamulaitis G, Klimasauskas S
Nucleic Acids Res. 2008; 36(10):e57.
PMID: 18450817
PMC: 2425465.
DOI: 10.1093/nar/gkn200.
An AT-rich sequence in human common fragile site FRA16D causes fork stalling and chromosome breakage in S. cerevisiae.
Zhang H, Freudenreich C
Mol Cell. 2007; 27(3):367-79.
PMID: 17679088
PMC: 2144737.
DOI: 10.1016/j.molcel.2007.06.012.
Effects of Friedreich's ataxia (GAA)n*(TTC)n repeats on RNA synthesis and stability.
Krasilnikova M, Kireeva M, Petrovic V, Knijnikova N, Kashlev M, Mirkin S
Nucleic Acids Res. 2007; 35(4):1075-84.
PMID: 17264130
PMC: 1851639.
DOI: 10.1093/nar/gkl1140.