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NCBI BLAST: a Better Web Interface

Overview
Specialty Biochemistry
Date 2008 Apr 29
PMID 18440982
Citations 1711
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Abstract

Basic Local Alignment Search Tool (BLAST) is a sequence similarity search program. The public interface of BLAST, http://www.ncbi.nlm.nih.gov/blast, at the NCBI website has recently been reengineered to improve usability and performance. Key new features include simplified search forms, improved navigation, a list of recent BLAST results, saved search strategies and a documentation directory. Here, we describe the BLAST web application's new features, explain design decisions and outline plans for future improvement.

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References
1.
Altschul S, Wootton J, Gertz E, Agarwala R, Morgulis A, Schaffer A . Protein database searches using compositionally adjusted substitution matrices. FEBS J. 2005; 272(20):5101-9. PMC: 1343503. DOI: 10.1111/j.1742-4658.2005.04945.x. View

2.
Ye J, McGinnis S, Madden T . BLAST: improvements for better sequence analysis. Nucleic Acids Res. 2006; 34(Web Server issue):W6-9. PMC: 1538791. DOI: 10.1093/nar/gkl164. View

3.
Altschul S, Madden T, Schaffer A, Zhang J, Zhang Z, Miller W . Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997; 25(17):3389-402. PMC: 146917. DOI: 10.1093/nar/25.17.3389. View

4.
McGinnis S, Madden T . BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res. 2004; 32(Web Server issue):W20-5. PMC: 441573. DOI: 10.1093/nar/gkh435. View

5.
Altschul S, Gish W, Miller W, Myers E, Lipman D . Basic local alignment search tool. J Mol Biol. 1990; 215(3):403-10. DOI: 10.1016/S0022-2836(05)80360-2. View