Protein Identification Using a Quadrupole Ion Trap Mass Spectrometer and SEQUEST Database Matching
Overview
Pathology
Affiliations
A procedure is described for rapid, sensitive protein identification utilizing liquid chromatography--tandem mass spectrometry. The analysis is performed on mixtures of peptides obtained by enzyme digestion. The SEQUEST computer program is used to match the sequence information in the spectra to a database of known protein sequences.
A review of methods for interpretation of glycopeptide tandem mass spectral data.
Hu H, Khatri K, Klein J, Leymarie N, Zaia J Glycoconj J. 2015; 33(3):285-96.
PMID: 26612686 PMC: 4882288. DOI: 10.1007/s10719-015-9633-3.
Day R, McDade K BMC Bioinformatics. 2013; 14:223.
PMID: 23855655 PMC: 3734162. DOI: 10.1186/1471-2105-14-223.
The proteome of normal pancreatic juice.
Doyle C, Yancey K, Pitt H, Wang M, Bemis K, Yip-Schneider M Pancreas. 2011; 41(2):186-94.
PMID: 22129531 PMC: 3288545. DOI: 10.1097/MPA.0b013e31822862f6.
Investigation of PARP-1, PARP-2, and PARG interactomes by affinity-purification mass spectrometry.
Isabelle M, Moreel X, Gagne J, Rouleau M, Ethier C, Gagne P Proteome Sci. 2010; 8:22.
PMID: 20388209 PMC: 2861645. DOI: 10.1186/1477-5956-8-22.