» Articles » PMID: 18337392

Evaluation of 16S RRNA Gene-based PCR Assays for Genus-level Identification of Helicobacter Species

Overview
Specialty Microbiology
Date 2008 Mar 14
PMID 18337392
Citations 8
Authors
Affiliations
Soon will be listed here.
Abstract

The inclusivity, exclusivity, and detection limit of six 16S rRNA gene-based Helicobacter genus-specific PCR assays were examined. Five out of six assays were 100% inclusive, but the tests varied considerably in their exclusivity (9.1 to 95.5%). The clinical detection limit varied between 10(3) and 1 viable bacterial cell per reaction mixture.

Citing Articles

SpeciesPrimer: a bioinformatics pipeline dedicated to the design of qPCR primers for the quantification of bacterial species.

Dreier M, Berthoud H, Shani N, Wechsler D, Junier P PeerJ. 2020; 8:e8544.

PMID: 32110486 PMC: 7034379. DOI: 10.7717/peerj.8544.


in a poultry slaughterhouse: Prevalence, genotyping and antibiotic resistance pattern.

Hamada M, Elbehiry A, Marzouk E, Moussa I, Hessain A, Alhaji J Saudi J Biol Sci. 2018; 25(6):1072-1078.

PMID: 30174504 PMC: 6117242. DOI: 10.1016/j.sjbs.2018.02.002.


Diagnosis of Genus Helicobacter through a hemi-nested PCR assay of 16S rRNA.

Qin H, Tang G, Yi P, Pan X, Huang H, Chang R Saudi Pharm J. 2016; 24(3):265-72.

PMID: 27275113 PMC: 4881236. DOI: 10.1016/j.jsps.2016.04.015.


Differentiation of non-pylori Helicobacter species based on PCR-restriction fragment length polymorphism of the 23S rRNA gene.

Yadegar A, Alebouyeh M, Lawson A, Mirzaei T, Nazemalhosseini Mojarad E, Zali M World J Microbiol Biotechnol. 2014; 30(6):1909-17.

PMID: 24493015 DOI: 10.1007/s11274-014-1615-2.


Helicobacter species and gut bacterial DNA in Meckel's diverticulum and the appendix.

Karagin P, Stenram U, Wadstrom T, Ljungh A World J Gastroenterol. 2011; 17(36):4104-8.

PMID: 22039324 PMC: 3203361. DOI: 10.3748/wjg.v17.i36.4104.


References
1.
Whary M, Fox J . Natural and experimental Helicobacter infections. Comp Med. 2004; 54(2):128-58. View

2.
Moyaert H, Haesebrouck F, Baele M, Picavet T, Ducatelle R, Chiers K . Prevalence of Helicobacter equorum in faecal samples from horses and humans. Vet Microbiol. 2007; 121(3-4):378-83. DOI: 10.1016/j.vetmic.2006.12.014. View

3.
Choi Y, Han J, Joo H . Identification of novel Helicobacter species in pig stomachs by PCR and partial sequencing. J Clin Microbiol. 2001; 39(9):3311-5. PMC: 88336. DOI: 10.1128/JCM.39.9.3311-3315.2001. View

4.
Germani Y, Dauga C, Duval P, Huerre M, Levy M, Pialoux G . Strategy for the detection of Helicobacter species by amplification of 16S rRNA genes and identification of H. felis in a human gastric biopsy. Res Microbiol. 1997; 148(4):315-26. DOI: 10.1016/S0923-2508(97)81587-2. View

5.
On S, Jordan P . Evaluation of 11 PCR assays for species-level identification of Campylobacter jejuni and Campylobacter coli. J Clin Microbiol. 2003; 41(1):330-6. PMC: 149560. DOI: 10.1128/JCM.41.1.330-336.2003. View