» Articles » PMID: 18321552

Can One Learn History from the Allelic Spectrum?

Overview
Date 2008 Mar 7
PMID 18321552
Citations 58
Authors
Affiliations
Soon will be listed here.
Abstract

It is well known that the neutral allelic frequency spectrum of a population is affected by the history of population size. A number of authors have used this fact to infer history given observed allele frequency data. We ask whether perfect information concerning the spectrum allows precise recovery of the history, and with an explicit example show that the answer is in the negative. This implies some limitations on how informative allelic spectra can be.

Citing Articles

A previously reported bottleneck in human ancestry 900 kya is likely a statistical artifact.

Deng Y, Nielsen R, Song Y Genetics. 2024; 229(1):1-3.

PMID: 39679949 PMC: 11708913. DOI: 10.1093/genetics/iyae192.


Conditional frequency spectra as a tool for studying selection on complex traits in biobanks.

Patel R, Weiss C, Zhu H, Mostafavi H, Simons Y, Spence J bioRxiv. 2024; .

PMID: 38948697 PMC: 11212903. DOI: 10.1101/2024.06.15.599126.


Rolling down that mountain: microgeographical adaptive divergence during a fast population expansion along a steep environmental gradient in European beech.

Modica A, Lalague H, Muratorio S, Scotti I Heredity (Edinb). 2024; 133(2):99-112.

PMID: 38890557 PMC: 11286953. DOI: 10.1038/s41437-024-00696-z.


Computationally Efficient Demographic History Inference from Allele Frequencies with Supervised Machine Learning.

Tran L, Sun C, Struck T, Sajan M, Gutenkunst R Mol Biol Evol. 2024; 41(5).

PMID: 38636507 PMC: 11082913. DOI: 10.1093/molbev/msae077.


Computationally efficient demographic history inference from allele frequencies with supervised machine learning.

Tran L, Sun C, Struck T, Sajan M, Gutenkunst R bioRxiv. 2024; .

PMID: 38405827 PMC: 10888863. DOI: 10.1101/2023.05.24.542158.