Genetic Linkage Map of the Nucleolus Organizer Region in the Soybean

Overview

Journal Genetics

Publisher Oxford University Press

Specialty Genetics

Date 2008 Jan 19

PMID 18202401

Citations 3

Authors

Kiwoung Yang

Soon-Chun Jeong

Affiliations

Soon will be listed here.

Abstract

Simple polymorphisms in ribosomal DNA repeats in the nucleolus organizer region (NOR) permitted the development of markers for the genetic mapping of the soybean NOR. The markers map to the top end of soybean linkage group F, one of either telomeric end predicted in the cytogenetic and primary trisomic studies.

Citing Articles

Development of a high-density linkage map and chromosome segment substitution lines for Japanese soybean cultivar Enrei.

Watanabe S, Shimizu T, Machita K, Tsubokura Y, Xia Z, Yamada T DNA Res. 2017; 25(2):123-136.

PMID: 29186379 PMC: 5909467. DOI: 10.1093/dnares/dsx043.

Nucleolar chromatin organization at different activities of soybean root meristematic cell nucleoli.

Stepinski D Protoplasma. 2012; 250(3):723-30.

PMID: 23011403 PMC: 3659268. DOI: 10.1007/s00709-012-0456-9.

Immunodetection of nucleolar proteins and ultrastructure of nucleoli of soybean root meristematic cells treated with chilling stress and after recovery.

Stepinski D Protoplasma. 2009; 235(1-4):77-89.

PMID: 19241118 DOI: 10.1007/s00709-009-0033-z.

References

Pagel J, Walling J, Young N, Shoemaker R, Jackson S . Segmental duplications within the Glycine max genome revealed by fluorescence in situ hybridization of bacterial artificial chromosomes. Genome. 2004; 47(4):764-8. DOI: 10.1139/g04-025. View

ZIMMER E, Jupe E, Walbot V . Ribosomal gene structure, variation and inheritance in maize and its ancestors. Genetics. 1988; 120(4):1125-36. PMC: 1203575. DOI: 10.1093/genetics/120.4.1125. View

Rogers S, Bendich A . Heritability and Variability in Ribosomal RNA Genes of Vicia faba. Genetics. 1987; 117(2):285-95. PMC: 1203204. DOI: 10.1093/genetics/117.2.285. View

Appels R, Dvorak J . The wheat ribosomal DNA spacer region: Its structure and variation in populations and among species. Theor Appl Genet. 2013; 63(4):337-48. DOI: 10.1007/BF00303905. View

Shishido R, Sano Y, Fukui K . Ribosomal DNAs: an exception to the conservation of gene order in rice genomes. Mol Gen Genet. 2000; 263(4):586-91. DOI: 10.1007/s004380051205. View

Singh R, Hymowitz T . The genomic relationship between Glycine max (L.) Merr. and G. soja Sieb. and Zucc. as revealed by pachytene chromosome analysis. Theor Appl Genet. 2013; 76(5):705-11. DOI: 10.1007/BF00303516. View

Walling J, Shoemaker R, Young N, Mudge J, Jackson S . Chromosome-level homeology in paleopolyploid soybean (Glycine max) revealed through integration of genetic and chromosome maps. Genetics. 2005; 172(3):1893-900. PMC: 1456260. DOI: 10.1534/genetics.105.051466. View

Snape J, Flavell R, Odell M, Hughes W, Payne P . Intrachromosomal mapping of the nucleolar organiser region relative to three marker loci on chromosome 1B of wheat (Triticum aestivum). Theor Appl Genet. 2013; 69(3):263-70. DOI: 10.1007/BF00662440. View

Soliman K, Jorgensen R, Allard R . Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci U S A. 1984; 81(24):8014-8. PMC: 392284. DOI: 10.1073/pnas.81.24.8014. View

10.

Nickrent D, Patrick J . The nuclear ribosomal DNA intergenic spacers of wild and cultivated soybean have low variation and cryptic subrepeats. Genome. 1998; 41(2):183-92. View

11.

Copenhaver G, Pikaard C . Two-dimensional RFLP analyses reveal megabase-sized clusters of rRNA gene variants in Arabidopsis thaliana, suggesting local spreading of variants as the mode for gene homogenization during concerted evolution. Plant J. 1996; 9(2):273-82. DOI: 10.1046/j.1365-313x.1996.09020273.x. View

12.

Griffor M, Vodkin L, Singh R, Hymowitz T . Fluorescent in situ hybridization to soybean metaphase chromosomes. Plant Mol Biol. 1991; 17(1):101-9. DOI: 10.1007/BF00036810. View

13.

Jeong S, Kristipati S, Hayes A, Maughan P, Noffsinger S, Gunduz I . Genetic and Sequence Analysis of Markers Tightly Linked to the Soybean mosaic virus Resistance Gene, Rsv3. Crop Sci. 2002; 42(1):265-270. View

14.

Zou J, Singh R, Lee J, Xu S, Cregan P, Hymowitz T . Assignment of molecular linkage groups to soybean chromosomes by primary trisomics. Theor Appl Genet. 2003; 107(4):745-50. DOI: 10.1007/s00122-003-1304-2. View

15.

Choi I, Hyten D, Matukumalli L, Song Q, Chaky J, Quigley C . A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis. Genetics. 2007; 176(1):685-96. PMC: 1893076. DOI: 10.1534/genetics.107.070821. View

16.

Lander E, Green P, ABRAHAMSON J, Barlow A, Daly M, Lincoln S . MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics. 1987; 1(2):174-81. DOI: 10.1016/0888-7543(87)90010-3. View