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The Role of Pleistocene Refugia and Rivers in Shaping Gorilla Genetic Diversity in Central Africa

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Specialty Science
Date 2007 Dec 14
PMID 18077351
Citations 52
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Abstract

The role of Pleistocene forest refugia and rivers in the evolutionary diversification of tropical biota has been the subject of considerable debate. A range-wide analysis of gorilla mitochondrial and nuclear variation was used to test the potential role of both refugia and rivers in shaping genetic diversity in current populations. Results reveal strong patterns of regional differentiation that are consistent with refugial hypotheses for central Africa. Four major mitochondrial haplogroups are evident with the greatest divergence between eastern (A, B) and western (C, D) gorillas. Coalescent simulations reject a model of recent east-west separation during the last glacial maximum but are consistent with a divergence time within the Pleistocene. Microsatellite data also support a similar regional pattern of population genetic structure. Signatures of demographic expansion were detected in eastern lowland (B) and Gabon/Congo (D3) mitochondrial haplogroups and are consistent with a history of postglacial expansion from formerly isolated refugia. Although most mitochondrial haplogroups are regionally defined, limited admixture is evident between neighboring haplogroups. Mantel tests reveal a significant isolation-by-distance effect among western lowland gorilla populations. However, mitochondrial genetic distances also correlate with the distance required to circumnavigate intervening rivers, indicating a possible role for rivers in partitioning gorilla genetic diversity. Comparative data are needed to evaluate the importance of both mechanisms of vicariance in other African rainforest taxa.

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References
1.
Hugall A, Moritz C, Moussalli A, Stanisic J . Reconciling paleodistribution models and comparative phylogeography in the Wet Tropics rainforest land snail Gnarosophia bellendenkerensis (Brazier 1875). Proc Natl Acad Sci U S A. 2002; 99(9):6112-7. PMC: 122911. DOI: 10.1073/pnas.092538699. View

2.
Eggert L, Rasner C, Woodruff D . The evolution and phylogeography of the African elephant inferred from mitochondrial DNA sequence and nuclear microsatellite markers. Proc Biol Sci. 2002; 269(1504):1993-2006. PMC: 1691127. DOI: 10.1098/rspb.2002.2070. View

3.
Dupanloup I, Schneider S, Excoffier L . A simulated annealing approach to define the genetic structure of populations. Mol Ecol. 2002; 11(12):2571-81. DOI: 10.1046/j.1365-294x.2002.01650.x. View

4.
Kuhner M, Yamato J, Felsenstein J . Maximum likelihood estimation of population growth rates based on the coalescent. Genetics. 1998; 149(1):429-34. PMC: 1460154. DOI: 10.1093/genetics/149.1.429. View

5.
da Silva M, Patton J . Amazonian phylogeography: mtDNA sequence variation in arboreal echimyid rodents (Caviomorpha). Mol Phylogenet Evol. 1993; 2(3):243-55. DOI: 10.1006/mpev.1993.1023. View