Pressure-induced Changes in the Solution Structure of the GB1 Domain of Protein G
Overview
Affiliations
The solution structure of the GB1 domain of protein G at a pressure of 2 kbar is presented. The structure was calculated as a change from an energy-minimised low-pressure structure using (1)H chemical shifts. Two separate changes can be characterised: a compression/distortion, which is linear with pressure; and a stabilisation of an alternative folded state. On application of pressure, linear chemical shift changes reveal that the backbone structure changes by about 0.2 A root mean square, and is compressed by about 1% overall. The alpha-helix compresses, particularly at the C-terminal end, and moves toward the beta-sheet, while the beta-sheet is twisted, with the corners closest to the alpha-helix curling up towards it. The largest changes in structure are along the second beta-strand, which becomes more twisted. This strand is where the protein binds to IgG. Curved chemical shift changes with pressure indicate that high pressure also populates an alternative structure with a distortion towards the C-terminal end of the helix, which is likely to be caused by insertion of a water molecule.
Modeling of Cu(II)-based protein spin labels using rotamer libraries.
Hasanbasri Z, Tessmer M, Stoll S, Saxena S Phys Chem Chem Phys. 2024; 26(8):6806-6816.
PMID: 38324256 PMC: 10883468. DOI: 10.1039/d3cp05951k.
Kranjc A, Narwani T, Abby S, de Brevern A Int J Mol Sci. 2023; 24(17).
PMID: 37686086 PMC: 10488288. DOI: 10.3390/ijms241713280.
The ability of trimethylamine N-oxide to resist pressure induced perturbations to water structure.
Laurent H, Youngs T, Headen T, Soper A, Dougan L Commun Chem. 2023; 5(1):116.
PMID: 36697784 PMC: 9814673. DOI: 10.1038/s42004-022-00726-z.
Dreydoppel M, Dorn B, Modig K, Akke M, Weininger U JACS Au. 2021; 1(6):833-842.
PMID: 34467336 PMC: 8395657. DOI: 10.1021/jacsau.1c00062.
Protein-Ligand Binding Volume Determined from a Single 2D NMR Spectrum with Increasing Pressure.
Skvarnavicius G, Toleikis Z, Michailoviene V, Roumestand C, Matulis D, Petrauskas V J Phys Chem B. 2021; 125(22):5823-5831.
PMID: 34032445 PMC: 8279561. DOI: 10.1021/acs.jpcb.1c02917.