Systems Biology and the Host Response to Viral Infection

Overview

Journal Nat Biotechnol

Specialty Biotechnology

Date 2007 Dec 11

PMID 18066032

Citations 72

Authors

Seng-Lai Tan

Gopinath Ganji

Bryan Paeper

Sean Proll

Michael G Katze

Affiliations

Soon will be listed here.

Citing Articles

Conference Report: LPMHealthcare Emerging Viruses 2023 (EVOX23): Pandemics-Learning from the Past and Present to Prepare for the Future.

Jenkins F, Mapulanga T, Thapa G, da Costa K, Temperton N Pathogens. 2024; 13(8).

PMID: 39204279 PMC: 11357271. DOI: 10.3390/pathogens13080679.

Host metabolomic responses in recurrent P. vivax malaria.

Yakubu M, Mwangi V, Netto R, Alecrim M, Alves J, Almeida A Sci Rep. 2024; 14(1):7249.

PMID: 38538661 PMC: 10973444. DOI: 10.1038/s41598-024-54231-5.

The inactivation and destruction of viruses by reactive oxygen species generated through physical and cold atmospheric plasma techniques: Current status and perspectives.

Kaushik N, Mitra S, Baek E, Nguyen L, Bhartiya P, Kim J J Adv Res. 2022; 43:59-71.

PMID: 36585115 PMC: 8905887. DOI: 10.1016/j.jare.2022.03.002.

Narrative review on century of respiratory pandemics from Spanish flu to COVID-19 and impact of nanotechnology on COVID-19 diagnosis and immune system boosting.

Elkhatib W, Abdelkareem S, Khalaf W, Shahin M, Elfadil D, Alhazmi A Virol J. 2022; 19(1):167.

PMID: 36280866 PMC: 9589879. DOI: 10.1186/s12985-022-01902-2.

Editorial: Metabolomics in Infectious Diseases.

Rahman M, Schellhorn H, Jithesh P, Rahman M Front Genet. 2022; 13:875835.

PMID: 35368682 PMC: 8967316. DOI: 10.3389/fgene.2022.875835.

References

Foulkes A, Wohl D, Frank I, Puleo E, Restine S, Wolfe M . Associations among race/ethnicity, ApoC-III genotypes, and lipids in HIV-1-infected individuals on antiretroviral therapy. PLoS Med. 2006; 3(3):e52. PMC: 1334223. DOI: 10.1371/journal.pmed.0030052. View

Walters K, Joyce M, Thompson J, Proll S, Wallace J, Smith M . Application of functional genomics to the chimeric mouse model of HCV infection: optimization of microarray protocols and genomics analysis. Virol J. 2006; 3:37. PMC: 1482685. DOI: 10.1186/1743-422X-3-37. View

Butcher E, Berg E, Kunkel E . Systems biology in drug discovery. Nat Biotechnol. 2004; 22(10):1253-9. DOI: 10.1038/nbt1017. View

Fredericksen B, Smith M, Katze M, Shi P, Gale Jr M . The host response to West Nile Virus infection limits viral spread through the activation of the interferon regulatory factor 3 pathway. J Virol. 2004; 78(14):7737-47. PMC: 434084. DOI: 10.1128/JVI.78.14.7737-7747.2004. View

Lee J, Wu C, Lee K, Chuang T, Katakura K, Liu Y . Activation of anti-hepatitis C virus responses via Toll-like receptor 7. Proc Natl Acad Sci U S A. 2006; 103(6):1828-33. PMC: 1413670. DOI: 10.1073/pnas.0510801103. View

Fellay J, Shianna K, Ge D, Colombo S, Ledergerber B, Weale M . A whole-genome association study of major determinants for host control of HIV-1. Science. 2007; 317(5840):944-7. PMC: 1991296. DOI: 10.1126/science.1143767. View

Kash J, Muhlberger E, Carter V, Grosch M, Perwitasari O, Proll S . Global suppression of the host antiviral response by Ebola- and Marburgviruses: increased antagonism of the type I interferon response is associated with enhanced virulence. J Virol. 2006; 80(6):3009-20. PMC: 1395418. DOI: 10.1128/JVI.80.6.3009-3020.2006. View

Cai X, Lu S, Zhang Z, Gonzalez C, Damania B, Cullen B . Kaposi's sarcoma-associated herpesvirus expresses an array of viral microRNAs in latently infected cells. Proc Natl Acad Sci U S A. 2005; 102(15):5570-5. PMC: 556237. DOI: 10.1073/pnas.0408192102. View

Chun T, Justement J, Lempicki R, Yang J, Dennis Jr G, Hallahan C . Gene expression and viral prodution in latently infected, resting CD4+ T cells in viremic versus aviremic HIV-infected individuals. Proc Natl Acad Sci U S A. 2003; 100(4):1908-13. PMC: 149932. DOI: 10.1073/pnas.0437640100. View

10.

Uetz P, Dong Y, Zeretzke C, Atzler C, Baiker A, Berger B . Herpesviral protein networks and their interaction with the human proteome. Science. 2005; 311(5758):239-42. DOI: 10.1126/science.1116804. View

11.

Cui C, Griffiths A, Li G, Silva L, Kramer M, Gaasterland T . Prediction and identification of herpes simplex virus 1-encoded microRNAs. J Virol. 2006; 80(11):5499-508. PMC: 1472173. DOI: 10.1128/JVI.00200-06. View

12.

Tumpey T, Basler C, Aguilar P, Zeng H, Solorzano A, Swayne D . Characterization of the reconstructed 1918 Spanish influenza pandemic virus. Science. 2005; 310(5745):77-80. DOI: 10.1126/science.1119392. View

13.

Giuliano K, Johnston P, Gough A, Taylor D . Systems cell biology based on high-content screening. Methods Enzymol. 2006; 414:601-19. DOI: 10.1016/S0076-6879(06)14031-8. View

14.

Xie Y, Xu D, Lu Z, Luo K, Jia J, Wang Y . Predictive factors for sustained response to interferon treatment in patients with chronic hepatitis C: a randomized, open, and multi-center controlled trial. Hepatobiliary Pancreat Dis Int. 2005; 4(2):213-9. View

15.

Grundhoff A, Sullivan C, Ganem D . A combined computational and microarray-based approach identifies novel microRNAs encoded by human gamma-herpesviruses. RNA. 2006; 12(5):733-50. PMC: 1440911. DOI: 10.1261/rna.2326106. View

16.

Piwnica-Worms D, Schuster D, Garbow J . Molecular imaging of host-pathogen interactions in intact small animals. Cell Microbiol. 2004; 6(4):319-31. DOI: 10.1111/j.1462-5822.2004.00379.x. View

17.

Damm E, Pelkmans L . Systems biology of virus entry in mammalian cells. Cell Microbiol. 2006; 8(8):1219-27. PMC: 7159091. DOI: 10.1111/j.1462-5822.2006.00745.x. View

18.

Silver P, Way J . Molecular systems biology in drug development. Clin Pharmacol Ther. 2007; 82(5):586-90. DOI: 10.1038/sj.clpt.6100293. View

19.

Li Y, Chan E, Katze M . Functional genomics analyses of differential macaque peripheral blood mononuclear cell infections by human immunodeficiency virus-1 and simian immunodeficiency virus. Virology. 2007; 366(1):137-49. PMC: 2082051. DOI: 10.1016/j.virol.2007.04.020. View

20.

Burnside J, Bernberg E, Anderson A, Lu C, Meyers B, Green P . Marek's disease virus encodes MicroRNAs that map to meq and the latency-associated transcript. J Virol. 2006; 80(17):8778-86. PMC: 1563840. DOI: 10.1128/JVI.00831-06. View