Alpha 2.0
Login Register
» Articles » PMID: 17984072

XBASE2: a Comprehensive Resource for Comparative Bacterial Genomics

Overview
Journal Nucleic Acids Res
Publisher Oxford University Press
Specialty Biochemistry
Date 2007 Nov 7
PMID 17984072
Citations 81
Authors
Roy R Chaudhuri
Nicholas J Loman
Lori A S Snyder
Christopher M Bailey
Dov J Stekel
Mark J Pallen
Affiliations
Soon will be listed here.
Abstract

xBASE is a genome database aimed at helping laboratory-based bacteriologists make best use of bacterial genome sequence data, with a particular emphasis on comparative genomics. The latest version, xBASE 2.0 (http://xbase.bham.ac.uk), now provides comprehensive coverage of all bacterial genomes and features an updated modularized backend and an improved user interface, which includes a taxonomy browser and a powerful full-text search facility.

Citing Articles

The world of ribonucleases from pseudomonads: a short trip through the main features and singularities.

Apura P, Goncalves L, Viegas S, Arraiano C Microb Biotechnol. 2021; 14(6):2316-2333.

PMID: 34427985 PMC: 8601179. DOI: 10.1111/1751-7915.13890.

Architecture and Self-Assembly of Clostridium sporogenes and Clostridium botulinum Spore Surfaces Illustrate a General Protective Strategy across Spore Formers.

Janganan T, Mullin N, Dafis-Sagarmendi A, Brunt J, Tzokov S, Stringer S mSphere. 2020; 5(4).

PMID: 32611700 PMC: 7333573. DOI: 10.1128/mSphere.00424-20.

DivIVA Controls Progeny Morphology and Diverse ParA Proteins Regulate Cell Division or Gliding Motility in .

Milner D, Ray L, Saxon E, Lambert C, Till R, Fenton A Front Microbiol. 2020; 11:542.

PMID: 32373080 PMC: 7186360. DOI: 10.3389/fmicb.2020.00542.

Effects of In vivo Emergent Tigecycline Resistance on the Pathogenic Potential of Acinetobacter baumannii.

Hornsey M, Wareham D Sci Rep. 2018; 8(1):4234.

PMID: 29523824 PMC: 5844891. DOI: 10.1038/s41598-018-22549-6.

Phase variable DNA repeats in influence transcription, translation, and protein sequence variation.

Zelewska M, Pulijala M, Spencer-Smith R, Mahmood H, Norman B, Churchward C Microb Genom. 2017; 2(8):e000078.

PMID: 28348872 PMC: 5320596. DOI: 10.1099/mgen.0.000078.

References
1.
Chaudhuri R, Pallen M . xBASE, a collection of online databases for bacterial comparative genomics. Nucleic Acids Res. 2005; 34(Database issue):D335-7. PMC: 1347502. DOI: 10.1093/nar/gkj140. View
2.
Kurtz S, Phillippy A, Delcher A, Smoot M, Shumway M, Antonescu C . Versatile and open software for comparing large genomes. Genome Biol. 2004; 5(2):R12. PMC: 395750. DOI: 10.1186/gb-2004-5-2-r12. View
3.
Chaudhuri R, Khan A, Pallen M . coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics. Nucleic Acids Res. 2003; 32(Database issue):D296-9. PMC: 308765. DOI: 10.1093/nar/gkh031. View
4.
Liolios K, Tavernarakis N, Hugenholtz P, Kyrpides N . The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide. Nucleic Acids Res. 2005; 34(Database issue):D332-4. PMC: 1347507. DOI: 10.1093/nar/gkj145. View
5.
Medigue C, Rouxel T, VIGIER P, Henaut A, Danchin A . Evidence for horizontal gene transfer in Escherichia coli speciation. J Mol Biol. 1991; 222(4):851-6. DOI: 10.1016/0022-2836(91)90575-q. View