Viesi E, Perricone U, Aloy P, Giugno R
J Cheminform. 2025; 17(1):13.
PMID: 39891207
PMC: 11786462.
DOI: 10.1186/s13321-025-00961-1.
Li R, Hasan M, Wang D
Molecules. 2025; 29(24.
PMID: 39770149
PMC: 11677113.
DOI: 10.3390/molecules29246061.
Faiz M, Khan S, Azim F, Ejaz N, Shamim F
Bioengineering (Basel). 2024; 11(11).
PMID: 39593811
PMC: 11592231.
DOI: 10.3390/bioengineering11111150.
Noor S, Naseem A, Awan H, Aslam W, Khan S, AlQahtani S
BMC Bioinformatics. 2024; 25(1):360.
PMID: 39563239
PMC: 11577875.
DOI: 10.1186/s12859-024-05978-1.
Zhao M, Zhang Y, Wang M, Ma L
Antibiotics (Basel). 2024; 13(10).
PMID: 39452213
PMC: 11504993.
DOI: 10.3390/antibiotics13100948.
Current computational tools for protein lysine acylation site prediction.
Qin Z, Ren H, Zhao P, Wang K, Liu H, Miao C
Brief Bioinform. 2024; 25(6).
PMID: 39316944
PMC: 11421846.
DOI: 10.1093/bib/bbae469.
In-silico comparison of fungal and bacterial asparaginase enzymes.
Tafvizi N, Behbahani M, Mohabatkar H
Mol Biol Res Commun. 2024; 13(4):183-191.
PMID: 39315287
PMC: 11416853.
DOI: 10.22099/mbrc.2024.50123.1981.
Reconstruction of Protein-Protein Interaction Network Based on DGO-SVM Method.
Hao T, Zhang M, Song Z, Gou Y, Wang B, Sun J
Curr Issues Mol Biol. 2024; 46(7):7353-7372.
PMID: 39057077
PMC: 11276262.
DOI: 10.3390/cimb46070436.
Mining Bovine Milk Proteins for DPP-4 Inhibitory Peptides Using Machine Learning and Virtual Proteolysis.
Zhang Y, Zhu Y, Bao X, Dai Z, Shen Q, Wang L
Research (Wash D C). 2024; 7:0391.
PMID: 38887277
PMC: 11182572.
DOI: 10.34133/research.0391.
Efficient screening of pharmacological broad-spectrum anti-cancer peptides utilizing advanced bidirectional Encoder representation from Transformers strategy.
Niu Y, Li Z, Chen Z, Huang W, Tan J, Tian F
Heliyon. 2024; 10(9):e30373.
PMID: 38765108
PMC: 11101728.
DOI: 10.1016/j.heliyon.2024.e30373.
StackDPP: a stacking ensemble based DNA-binding protein prediction model.
Ahmed S, Bose D, Khandoker R, Rahman M
BMC Bioinformatics. 2024; 25(1):111.
PMID: 38486135
PMC: 10941422.
DOI: 10.1186/s12859-024-05714-9.
An overview of descriptors to capture protein properties - Tools and perspectives in the context of QSAR modeling.
Emonts J, Buyel J
Comput Struct Biotechnol J. 2024; 21:3234-3247.
PMID: 38213891
PMC: 10781719.
DOI: 10.1016/j.csbj.2023.05.022.
Dual-Signal Feature Spaces Map Protein Subcellular Locations Based on Immunohistochemistry Image and Protein Sequence.
Zou K, Wang S, Wang Z, Zou H, Yang F
Sensors (Basel). 2023; 23(22).
PMID: 38005402
PMC: 10675401.
DOI: 10.3390/s23229014.
ACP-BC: A Model for Accurate Identification of Anticancer Peptides Based on Fusion Features of Bidirectional Long Short-Term Memory and Chemically Derived Information.
Sun M, Hu H, Pang W, Zhou Y
Int J Mol Sci. 2023; 24(20).
PMID: 37895128
PMC: 10607064.
DOI: 10.3390/ijms242015447.
Using several pseudo amino acid composition types and different machine learning algorithms to classify and predict archaeal phospholipases.
Samman N, Mohabatkar H, Rabiei P
Mol Biol Res Commun. 2023; 12(3):117-126.
PMID: 37525666
PMC: 10387176.
DOI: 10.22099/mbrc.2023.47756.1845.
iAMPCN: a deep-learning approach for identifying antimicrobial peptides and their functional activities.
Xu J, Li F, Li C, Guo X, Landersdorfer C, Shen H
Brief Bioinform. 2023; 24(4).
PMID: 37369638
PMC: 10359087.
DOI: 10.1093/bib/bbad240.
Recognition of outer membrane proteins using multiple feature fusion.
Su W, Qian X, Yang K, Ding H, Huang C, Zhang Z
Front Genet. 2023; 14:1211020.
PMID: 37351347
PMC: 10284346.
DOI: 10.3389/fgene.2023.1211020.
PreTP-2L: identification of therapeutic peptides and their types using two-layer ensemble learning framework.
Yan K, Guo Y, Liu B
Bioinformatics. 2023; 39(4).
PMID: 37010503
PMC: 10076046.
DOI: 10.1093/bioinformatics/btad125.
Bioinformatics Approaches Applied to the Discovery of Antifungal Peptides.
Rodriguez-Cerdeira C, Molares-Vila A, Sanchez-Cardenas C, Velasquez-Bamaca J, Martinez-Herrera E
Antibiotics (Basel). 2023; 12(3).
PMID: 36978434
PMC: 10044696.
DOI: 10.3390/antibiotics12030566.
Antibody Class(es) Predictor for Epitopes (AbCPE): A Multi-Label Classification Algorithm.
Kadam K, Peerzada N, Karbhal R, Sawant S, Valadi J, Kulkarni-Kale U
Front Bioinform. 2022; 1:709951.
PMID: 36303781
PMC: 9581038.
DOI: 10.3389/fbinf.2021.709951.