» Articles » PMID: 17893084

Idiographica: a General-purpose Web Application to Build Idiograms On-demand for Human, Mouse and Rat

Overview
Journal Bioinformatics
Specialty Biology
Date 2007 Sep 26
PMID 17893084
Citations 46
Authors
Affiliations
Soon will be listed here.
Abstract

Summary: We have launched a web server, which serves as a general-purpose idiogram rendering service, and allows users to generate high-quality idiograms with custom annotation according to their own genome-wide mapping/annotation data through an easy-to-use interface. The generated idiograms are suitable not only for visualizing summaries of genome-wide analysis but also for many types of presentation material including web pages, conference posters, oral presentations, etc.

Availability: Idiographica is freely available at http://www.ncrna.org/idiographica/

Citing Articles

Shared and unique patterns of autonomous human endogenous retrovirus loci transcriptomes in CD14 + monocytes from individuals with physical trauma or infection with COVID-19.

Koo H, Morrow C Retrovirology. 2024; 21(1):17.

PMID: 39497142 PMC: 11533341. DOI: 10.1186/s12977-024-00652-z.


The mA methylation and expression profiles of mouse neural stem cells after hypoxia/reoxygenation.

Zhang S, Cui K, Li Y, Fan Y, Wang D, Yao X Stem Cell Res Ther. 2024; 15(1):43.

PMID: 38360659 PMC: 10870567. DOI: 10.1186/s13287-024-03658-8.


A study of transposable element-associated structural variations (TASVs) using a de novo-assembled Korean genome.

Mun S, Kim S, Lee W, Kang K, Meyer T, Han B Exp Mol Med. 2021; 53(4):615-630.

PMID: 33833373 PMC: 8102501. DOI: 10.1038/s12276-021-00586-y.


: drawing SVG graphics to visualize and map genome-wide data on the idiograms.

Hao Z, Lv D, Ge Y, Shi J, Weijers D, Yu G PeerJ Comput Sci. 2021; 6:e251.

PMID: 33816903 PMC: 7924719. DOI: 10.7717/peerj-cs.251.


Protamine-2 Deficiency Initiates a Reactive Oxygen Species (ROS)-Mediated Destruction Cascade during Epididymal Sperm Maturation in Mice.

Schneider S, Shakeri F, Trotschel C, Arevalo L, Kruse A, Buness A Cells. 2020; 9(8).

PMID: 32727081 PMC: 7463811. DOI: 10.3390/cells9081789.