QSCOP--SCOP Quantified by Structural Relationships

Overview

Journal Bioinformatics

Publisher Oxford University Press

Specialty Biology

Date 2006 Nov 28

PMID 17127679

Citations 7

Authors

Stefan J Suhrer

Markus Wiederstein

Manfred J Sippl

Affiliations

Soon will be listed here.

Abstract

Unlabelled: The database SCOP (Structural Classification Of Proteins) has become a major resource in bioinformatics and protein science. A particular strength of SCOP is the flexibility of its rules enabling the preservation of the many details spotted by experts in the classification process. Here we endow classic SCOP Families with quantified structural information and comment on the structural diversity found in the SCOP hierarchy.

Availability: Quantified SCOP (QSCOP) is available as a public WEB service. http://services.came.sbg.ac.at.

Citing Articles

Current progress in Structure-Based Rational Drug Design marks a new mindset in drug discovery.

Lounnas V, Ritschel T, Kelder J, McGuire R, Bywater R, Foloppe N Comput Struct Biotechnol J. 2014; 5:e201302011.

PMID: 24688704 PMC: 3962124. DOI: 10.5936/csbj.201302011.

SCOP2 prototype: a new approach to protein structure mining.

Andreeva A, Howorth D, Chothia C, Kulesha E, Murzin A Nucleic Acids Res. 2013; 42(Database issue):D310-4.

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Touring protein space with Matt.

Daniels N, Kumar A, Cowen L, Menke M IEEE/ACM Trans Comput Biol Bioinform. 2011; 9(1):286-93.

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Detection and alignment of 3D domain swapping proteins using angle-distance image-based secondary structural matching techniques.

Chu C, Lo W, Wang H, Hsu Y, Hwang J, Lyu P PLoS One. 2010; 5(10):e13361.

PMID: 20976204 PMC: 2955075. DOI: 10.1371/journal.pone.0013361.

COPS--a novel workbench for explorations in fold space.

Suhrer S, Wiederstein M, Gruber M, Sippl M Nucleic Acids Res. 2009; 37(Web Server issue):W539-44.

PMID: 19465386 PMC: 2703906. DOI: 10.1093/nar/gkp411.