» Articles » PMID: 1707519

SRP-RNA Sequence Alignment and Secondary Structure

Overview
Specialty Biochemistry
Date 1991 Jan 25
PMID 1707519
Citations 94
Authors
Affiliations
Soon will be listed here.
Abstract

The secondary structures of the RNAs from the signal recognition particle, termed SRP-RNA, were derived buy comparative analyses of an alignment of 39 sequences. The models are minimal in that only base pairs are included for which there is comparative evidence. The structures represent refinements of earlier versions and include a new short helix.

Citing Articles

The role of SRP9/SRP14 in regulating Alu RNA.

Gussakovsky D, Black N, Booy E, McKenna S RNA Biol. 2024; 21(1):1-12.

PMID: 39563162 PMC: 11581171. DOI: 10.1080/15476286.2024.2430817.


A Proposal for the RNAome at the Dawn of the Last Universal Common Ancestor.

Palacios-Perez M, Jose M Genes (Basel). 2024; 15(9).

PMID: 39336786 PMC: 11431127. DOI: 10.3390/genes15091195.


A Proposal of the Ur-RNAome.

Palacios-Perez M, Jose M Genes (Basel). 2023; 14(12).

PMID: 38136981 PMC: 10743229. DOI: 10.3390/genes14122158.


A biological sequence comparison algorithm using quantum computers.

Kosoglu-Kind B, Loredo R, Grossi M, Bernecker C, Burks J, Buchkremer R Sci Rep. 2023; 13(1):14552.

PMID: 37666875 PMC: 10477269. DOI: 10.1038/s41598-023-41086-5.


Alu RNA fold links splicing with signal recognition particle proteins.

Borovska I, Vorechovsky I, Kralovicova J Nucleic Acids Res. 2023; 51(15):8199-8216.

PMID: 37309897 PMC: 10450188. DOI: 10.1093/nar/gkad500.


References
1.
Zieve G, Penman S . Small RNA species of the HeLa cell: metabolism and subcellular localization. Cell. 1976; 8(1):19-31. DOI: 10.1016/0092-8674(76)90181-1. View

2.
Toschka H, Struck J, Erdmann V . The 4.5S RNA gene from Pseudomonas aeruginosa. Nucleic Acids Res. 1989; 17(1):31-6. PMC: 331533. DOI: 10.1093/nar/17.1.31. View

3.
Woese C, Kandler O, Wheelis M . Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci U S A. 1990; 87(12):4576-9. PMC: 54159. DOI: 10.1073/pnas.87.12.4576. View

4.
Haas E, Brown J, Daniels C, Reeve J . Genes encoding the 7S RNA and tRNA(Ser) are linked to one of the two rRNA operons in the genome of the extremely thermophilic archaebacterium Methanothermus fervidus. Gene. 1990; 90(1):51-9. DOI: 10.1016/0378-1119(90)90438-w. View

5.
Kaine B . Structure of the archaebacterial 7S RNA molecule. Mol Gen Genet. 1990; 221(3):315-21. DOI: 10.1007/BF00259394. View