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Pristionchus.org: a Genome-centric Database of the Nematode Satellite Species Pristionchus Pacificus

Overview
Specialty Biochemistry
Date 2006 Oct 26
PMID 17062617
Citations 5
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Abstract

Comparative studies have been of invaluable importance to the understanding of evolutionary biology. The evolution of developmental programs can be studied in nematodes at a single cell resolution given their fixed cell lineage. We have established Pristionchus pacificus as a major satellite organism for evolutionary developmental biology relative to Caenorhabditis elegans, the model nematode. Online genomic information to support studies in this satellite system can be accessed at http://www.pristionchus.org. Our web resource offers diverse content covering genome browsing, genetic and physical maps, similarity searches, a community platform and assembly details. Content will be continuously improved as we annotate the P.pacificus genome, and will be an indispensable resource for P.pacificus genomics.

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References
1.
Bao Z, Eddy S . Automated de novo identification of repeat sequence families in sequenced genomes. Genome Res. 2002; 12(8):1269-76. PMC: 186642. DOI: 10.1101/gr.88502. View

2.
Srinivasan J, Sinz W, Lanz C, Brand A, Nandakumar R, Raddatz G . A bacterial artificial chromosome-based genetic linkage map of the nematode Pristionchus pacificus. Genetics. 2002; 162(1):129-34. PMC: 1462235. DOI: 10.1093/genetics/162.1.129. View

3.
Stein L, Mungall C, Shu S, Caudy M, Mangone M, Day A . The generic genome browser: a building block for a model organism system database. Genome Res. 2002; 12(10):1599-610. PMC: 187535. DOI: 10.1101/gr.403602. View

4.
Fang Z, Polacco M, Chen S, Schroeder S, Hancock D, Sanchez H . cMap: the comparative genetic map viewer. Bioinformatics. 2003; 19(3):416-7. DOI: 10.1093/bioinformatics/btg012. View

5.
Lee K, Eizinger A, Nandakumar R, Schuster S, Sommer R . Limited microsynteny between the genomes of Pristionchus pacificus and Caenorhabditis elegans. Nucleic Acids Res. 2003; 31(10):2553-60. PMC: 156041. DOI: 10.1093/nar/gkg359. View