» Articles » PMID: 16939790

TM4 Microarray Software Suite

Overview
Journal Methods Enzymol
Specialty Biochemistry
Date 2006 Aug 31
PMID 16939790
Citations 966
Authors
Affiliations
Soon will be listed here.
Abstract

Powerful specialized software is essential for managing, quantifying, and ultimately deriving scientific insight from results of a microarray experiment. We have developed a suite of software applications, known as TM4, to support such gene expression studies. The suite consists of open-source tools for data management and reporting, image analysis, normalization and pipeline control, and data mining and visualization. An integrated MIAME-compliant MySQL database is included. This chapter describes each component of the suite and includes a sample analysis walk-through.

Citing Articles

Comparative Metabolomics of ATCC824 and its Engineered Strain, DG1.

Chung J, Lee J, Kim S, Kim K J Microbiol Biotechnol. 2025; 35:e2407028.

PMID: 40016151 PMC: 11896804. DOI: 10.4014/jmb.2407.07028.


Reproductomics: Exploring the Applications and Advancements of Computational Tools.

SENGUPTA P, Dutta S, Liew F, Samrot A, Dasgupta S, Rajput M Physiol Res. 2024; 73(5):687-702.

PMID: 39530905 PMC: 11629954. DOI: 10.33549/physiolres.935389.


ADP-glucose pyrophosphorylase gene family in soybean and implications in drought stress tolerance.

Chao M, Zhang Q, Huang L, Wang L, Dong J, Kou S Genes Genomics. 2024; 46(10):1183-1199.

PMID: 39214924 DOI: 10.1007/s13258-024-01558-y.


Genome-wide characterization of the GRF transcription factors in potato ( L.) and expression analysis of genes during potato tuber dormancy and sprouting.

Cui D, Song Y, Jiang W, Ye H, Wang S, Yuan L Front Plant Sci. 2024; 15:1417204.

PMID: 38978523 PMC: 11228316. DOI: 10.3389/fpls.2024.1417204.


Upregulated Palmitoleate and Oleate Production in Promotes Gentamicin Resistance.

Ye G, Fan L, Zheng Y, Liao X, Huang Q, Su Y Molecules. 2024; 29(11).

PMID: 38893378 PMC: 11173871. DOI: 10.3390/molecules29112504.