Shaban H, Friman E, Deluz C, Tollenaere A, Katanayeva N, Suter D
Proc Natl Acad Sci U S A. 2024; 121(18):e2311374121.
PMID: 38648478
PMC: 11067044.
DOI: 10.1073/pnas.2311374121.
Zhang Q, Lin P, Mao A, Liu Y, Shang X, Wei X
Haematologica. 2023; 109(3):1000-1006.
PMID: 37767576
PMC: 10905065.
DOI: 10.3324/haematol.2023.282902.
Roy A, Conroy R, Taylor V, Mietz J, Fingerman I, Pazin M
Mol Cell. 2023; 83(3):335-342.
PMID: 36640770
PMC: 9898192.
DOI: 10.1016/j.molcel.2022.12.025.
Popay T, Dixon J
J Biol Chem. 2022; 298(8):102117.
PMID: 35691341
PMC: 9283939.
DOI: 10.1016/j.jbc.2022.102117.
Rausch C, Weber P, Prorok P, Horl D, Maiser A, Lehmkuhl A
Nucleic Acids Res. 2020; 48(22):12751-12777.
PMID: 33264404
PMC: 7736824.
DOI: 10.1093/nar/gkaa1124.
Navigating the crowd: visualizing coordination between genome dynamics, structure, and transcription.
Shaban H, Barth R, Bystricky K
Genome Biol. 2020; 21(1):278.
PMID: 33203432
PMC: 7670612.
DOI: 10.1186/s13059-020-02185-y.
ZNF143 in Chromatin Looping and Gene Regulation.
Ye B, Yang G, Li Y, Zhang C, Wang Q, Yu G
Front Genet. 2020; 11:338.
PMID: 32318100
PMC: 7154149.
DOI: 10.3389/fgene.2020.00338.
Synergistic Effects of Hyperandrogenemia and Obesogenic Western-style Diet on Transcription and DNA Methylation in Visceral Adipose Tissue of Nonhuman Primates.
Carbone L, Davis B, Fei S, White A, Nevonen K, Takahashi D
Sci Rep. 2019; 9(1):19232.
PMID: 31848372
PMC: 6917716.
DOI: 10.1038/s41598-019-55291-8.
The effects of Arabidopsis genome duplication on the chromatin organization and transcriptional regulation.
Zhang H, Zheng R, Wang Y, Zhang Y, Hong P, Fang Y
Nucleic Acids Res. 2019; 47(15):7857-7869.
PMID: 31184697
PMC: 6736098.
DOI: 10.1093/nar/gkz511.
CTCF maintains regulatory homeostasis of cancer pathways.
Aitken S, Ibarra-Soria X, Kentepozidou E, Flicek P, Feig C, Marioni J
Genome Biol. 2018; 19(1):106.
PMID: 30086769
PMC: 6081938.
DOI: 10.1186/s13059-018-1484-3.
Computational construction of 3D chromatin ensembles and prediction of functional interactions of alpha-globin locus from 5C data.
Gursoy G, Xu Y, Kenter A, Liang J
Nucleic Acids Res. 2017; 45(20):11547-11558.
PMID: 28981716
PMC: 5714131.
DOI: 10.1093/nar/gkx784.
Long-range regulators of the lncRNA HOTAIR enhance its prognostic potential in breast cancer.
Milevskiy M, Al-Ejeh F, Saunus J, Northwood K, Bailey P, Betts J
Hum Mol Genet. 2016; 25(15):3269-3283.
PMID: 27378691
PMC: 5179926.
DOI: 10.1093/hmg/ddw177.
Gene Insertion Into Genomic Safe Harbors for Human Gene Therapy.
Papapetrou E, Schambach A
Mol Ther. 2016; 24(4):678-84.
PMID: 26867951
PMC: 4886940.
DOI: 10.1038/mt.2016.38.
Biased allelic expression in human primary fibroblast single cells.
Borel C, Ferreira P, Santoni F, Delaneau O, Fort A, Popadin K
Am J Hum Genet. 2015; 96(1):70-80.
PMID: 25557783
PMC: 4289680.
DOI: 10.1016/j.ajhg.2014.12.001.
Epigenetic control of hypoxia inducible factor-1α-dependent expression of placental growth factor in hypoxic conditions.
Tudisco L, Della Ragione F, Tarallo V, Apicella I, DEsposito M, Matarazzo M
Epigenetics. 2014; 9(4):600-10.
PMID: 24504136
PMC: 4121370.
DOI: 10.4161/epi.27835.
A genome-wide map of CTCF multivalency redefines the CTCF code.
Nakahashi H, Kieffer Kwon K, Resch W, Vian L, Dose M, Stavreva D
Cell Rep. 2013; 3(5):1678-1689.
PMID: 23707059
PMC: 3770538.
DOI: 10.1016/j.celrep.2013.04.024.
SATB1-mediated functional packaging of chromatin into loops.
Kohwi-Shigematsu T, Kohwi Y, Takahashi K, Richards H, Ayers S, Han H
Methods. 2012; 58(3):243-54.
PMID: 22782115
PMC: 4029128.
DOI: 10.1016/j.ymeth.2012.06.019.
Spatial Organization and Dynamics of Transcription Elongation and Pre-mRNA Processing in Live Cells.
Sanchez-Alvarez M, Sanchez-Hernandez N, Sune C
Genet Res Int. 2012; 2011:626081.
PMID: 22567362
PMC: 3335512.
DOI: 10.4061/2011/626081.
GeSICA: genome segmentation from intra-chromosomal associations.
Liu L, Zhang Y, Feng J, Zheng N, Yin J, Zhang Y
BMC Genomics. 2012; 13:164.
PMID: 22559164
PMC: 3460730.
DOI: 10.1186/1471-2164-13-164.
Loops determine the mechanical properties of mitotic chromosomes.
Zhang Y, Heermann D
PLoS One. 2012; 6(12):e29225.
PMID: 22216220
PMC: 3246460.
DOI: 10.1371/journal.pone.0029225.