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Palindrome-mediated Chromosomal Translocations in Humans

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Publisher Elsevier
Date 2006 Jul 11
PMID 16829213
Citations 50
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Abstract

Recently, it has emerged that palindrome-mediated genomic instability contributes to a diverse group of genomic rearrangements including translocations, deletions, and amplifications. One of the best studied examples is the recurrent t(11;22) constitutional translocation in humans that has been well documented to be mediated by palindromic AT-rich repeats (PATRRs) on chromosomes 11q23 and 22q11. De novo examples of the translocation are detected at a high frequency in sperm samples from normal healthy males, but not in lymphoblasts or fibroblasts. Cloned breakpoint sequences preferentially form a cruciform configuration in vitro. Analysis of the junction fragments implicates frequent double-strand-breaks (DSBs) at the center of both palindromic regions, followed by repair through the non-homologous end joining (NHEJ) pathway. We propose that the PATRR adopts a cruciform structure in male meiotic cells, creating genomic instability that leads to the recurrent translocation.

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References
1.
Elborough K, West S . Resolution of synthetic Holliday junctions in DNA by an endonuclease activity from calf thymus. EMBO J. 1990; 9(9):2931-6. PMC: 552009. DOI: 10.1002/j.1460-2075.1990.tb07484.x. View

2.
Doherty J, Lindeman R, Trent R, Graham M, Woodcock D . Escherichia coli host strains SURE and SRB fail to preserve a palindrome cloned in lambda phage: improved alternate host strains. Gene. 1993; 124(1):29-35. DOI: 10.1016/0378-1119(93)90758-u. View

3.
Gordenin D, Lobachev K, Degtyareva N, Malkova A, Perkins E, Resnick M . Inverted DNA repeats: a source of eukaryotic genomic instability. Mol Cell Biol. 1993; 13(9):5315-22. PMC: 360228. DOI: 10.1128/mcb.13.9.5315-5322.1993. View

4.
Leach D . Long DNA palindromes, cruciform structures, genetic instability and secondary structure repair. Bioessays. 1994; 16(12):893-900. DOI: 10.1002/bies.950161207. View

5.
Collick A, Drew J, Penberth J, Bois P, Luckett J, Scaerou F . Instability of long inverted repeats within mouse transgenes. EMBO J. 1996; 15(5):1163-71. PMC: 450015. View