Siodmiak J
Entropy (Basel). 2024; 26(3).
PMID: 38539725
PMC: 10969627.
DOI: 10.3390/e26030214.
Cardoch S, Timneanu N, Caleman C, Scheicher R
ACS Nanosci Au. 2023; 2(2):119-127.
PMID: 37101662
PMC: 10125149.
DOI: 10.1021/acsnanoscienceau.1c00022.
Ghahremanpour M, Tirado-Rives J, Jorgensen W
J Phys Chem B. 2022; 126(31):5896-5907.
PMID: 35914179
PMC: 9939004.
DOI: 10.1021/acs.jpcb.2c03686.
Yang J
Polymers (Basel). 2022; 14(10).
PMID: 35631942
PMC: 9145491.
DOI: 10.3390/polym14102060.
Zheng J, Wang D, Zhang Q, Song M, Jiao M, Zhang Z
Materials (Basel). 2022; 15(6).
PMID: 35329600
PMC: 8954174.
DOI: 10.3390/ma15062148.
Molecule Dynamics Simulation of the Effect of Oxidative Aging on Properties of Nitrile Rubber.
Yang J, Lou W
Polymers (Basel). 2022; 14(2).
PMID: 35054633
PMC: 8778742.
DOI: 10.3390/polym14020226.
Membrane permeability of small molecules from unbiased molecular dynamics simulations.
Kramer A, Ghysels A, Wang E, Venable R, Klauda J, Brooks B
J Chem Phys. 2020; 153(12):124107.
PMID: 33003739
PMC: 7519415.
DOI: 10.1063/5.0013429.
Molecular Transport across the Ionic Liquid-Aqueous Electrolyte Interface in a MoS Nanopore.
Shankla M, Aksimentiev A
ACS Appl Mater Interfaces. 2020; 12(23):26624-26634.
PMID: 32393017
PMC: 7292782.
DOI: 10.1021/acsami.0c04523.
Molecular Mechanisms of DNA Replication and Repair Machinery: Insights from Microscopic Simulations.
Maffeo C, Chou H, Aksimentiev A
Adv Theory Simul. 2019; 2(5).
PMID: 31728433
PMC: 6855400.
DOI: 10.1002/adts.201800191.
Step-defect guided delivery of DNA to a graphene nanopore.
Shankla M, Aksimentiev A
Nat Nanotechnol. 2019; 14(9):858-865.
PMID: 31384038
PMC: 6863603.
DOI: 10.1038/s41565-019-0514-y.
Accelerating Membrane Simulations with Hydrogen Mass Repartitioning.
Balusek C, Hwang H, Lau C, Lundquist K, Hazel A, Pavlova A
J Chem Theory Comput. 2019; 15(8):4673-4686.
PMID: 31265271
PMC: 7271963.
DOI: 10.1021/acs.jctc.9b00160.
A modified Lowe-Andersen thermostat for a hard sphere fluid.
Verbeek M
Eur Phys J E Soft Matter. 2019; 42(5):60.
PMID: 31089826
DOI: 10.1140/epje/i2019-11828-5.
PoreDesigner for tuning solute selectivity in a robust and highly permeable outer membrane pore.
Chowdhury R, Ren T, Shankla M, Decker K, Grisewood M, Prabhakar J
Nat Commun. 2018; 9(1):3661.
PMID: 30202038
PMC: 6131167.
DOI: 10.1038/s41467-018-06097-1.
Water-Compression Gating of Nanopore Transport.
Wilson J, Aksimentiev A
Phys Rev Lett. 2018; 120(26):268101.
PMID: 30004740
PMC: 6262874.
DOI: 10.1103/PhysRevLett.120.268101.
On the effect of the thermostat in non-equilibrium molecular dynamics simulations.
Ruiz-Franco J, Rovigatti L, Zaccarelli E
Eur Phys J E Soft Matter. 2018; 41(7):80.
PMID: 29955976
DOI: 10.1140/epje/i2018-11689-4.
Regimes of Flow over Complex Structures of Endothelial Glycocalyx: A Molecular Dynamics Simulation Study.
Jiang X, Feng M, Ventikos Y, Luo K
Sci Rep. 2018; 8(1):5732.
PMID: 29636511
PMC: 5893603.
DOI: 10.1038/s41598-018-24041-7.
Nanoscale Ion Pump Derived from a Biological Water Channel.
Decker K, Page M, Aksimentiev A
J Phys Chem B. 2017; 121(33):7899-7906.
PMID: 28745057
PMC: 5570624.
DOI: 10.1021/acs.jpcb.7b05568.
Modulation of Molecular Flux Using a Graphene Nanopore Capacitor.
Shankla M, Aksimentiev A
J Phys Chem B. 2016; 121(15):3724-3733.
PMID: 28009170
PMC: 5523142.
DOI: 10.1021/acs.jpcb.6b10574.
Understanding ligand-receptor non-covalent binding kinetics using molecular modeling.
Tang Z, Roberts C, Chang C
Front Biosci (Landmark Ed). 2016; 22(6):960-981.
PMID: 27814657
PMC: 5470370.
DOI: 10.2741/4527.
Subdiffusion in Membrane Permeation of Small Molecules.
Chipot C, Comer J
Sci Rep. 2016; 6:35913.
PMID: 27805049
PMC: 5090971.
DOI: 10.1038/srep35913.