Short, Interspersed Repetitive DNA Sequences in Prokaryotic Genomes

Overview

Journal J Bacteriol

Publisher American Society for Microbiology

Specialty Microbiology

Date 1992 Jul 1

PMID 1624445

Citations 93

Authors

J R Lupski

G M Weinstock

Affiliations

Soon will be listed here.

Citing Articles

Rep-PCR Analyses Reveal Genetic Variation of Ralstonia solanacearum Causing Wilt of Solanaceaous Vegetables in Bangladesh.

Hossain M, Masud M, Hossain M, Haque M, Uddin M, Alam M Curr Microbiol. 2022; 79(8):234.

PMID: 35767115 DOI: 10.1007/s00284-022-02932-3.

Characterization and Genetic Diversity of pv. Isolates Associated with Rice Bacterial Leaf Spot in Heilongjiang, China.

Peng L, Yang S, Zhang Y, Haseeb Y, Song S, Xu X Biology (Basel). 2022; 11(5).

PMID: 35625448 PMC: 9138427. DOI: 10.3390/biology11050720.

Using unique ORFan genes as strain-specific identifiers for Escherichia coli.

Ferrandis-Vila M, Tiwari S, Mamerow S, Semmler T, Menge C, Berens C BMC Microbiol. 2022; 22(1):135.

PMID: 35585491 PMC: 9118744. DOI: 10.1186/s12866-022-02508-y.

Transposable elements promote the evolution of genome streamlining.

van Dijk B, Bertels F, Stolk L, Takeuchi N, Rainey P Philos Trans R Soc Lond B Biol Sci. 2021; 377(1842):20200477.

PMID: 34839699 PMC: 8628081. DOI: 10.1098/rstb.2020.0477.

A sensitive repeat identification framework based on short and long reads.

Liao X, Li M, Hu K, Wu F, Gao X, Wang J Nucleic Acids Res. 2021; 49(17):e100.

PMID: 34214175 PMC: 8464074. DOI: 10.1093/nar/gkab563.

References

Dahl M, FRANCOZ E, Saurin W, Boos W, Manson M, Hofnung M . Comparison of sequences from the malB regions of Salmonella typhimurium and Enterobacter aerogenes with Escherichia coli K12: a potential new regulatory site in the interoperonic region. Mol Gen Genet. 1989; 218(2):199-207. DOI: 10.1007/BF00331269. View

Scherer S, Stevens D . A Candida albicans dispersed, repeated gene family and its epidemiologic applications. Proc Natl Acad Sci U S A. 1988; 85(5):1452-6. PMC: 279789. DOI: 10.1073/pnas.85.5.1452. View

Zuerner R, Bolin C . Repetitive sequence element cloned from Leptospira interrogans serovar hardjo type hardjo-bovis provides a sensitive diagnostic probe for bovine leptospirosis. J Clin Microbiol. 1988; 26(12):2495-500. PMC: 266932. DOI: 10.1128/jcm.26.12.2495-2500.1988. View

Hudson G, Davidson B . Nucleotide sequence and transcription of the phenylalanine and tyrosine operons of Escherichia coli K12. J Mol Biol. 1984; 180(4):1023-51. DOI: 10.1016/0022-2836(84)90269-9. View

Gilson E, Rousset J, CLEMENT J, Hofnung M . A subfamily of E. coli palindromic units implicated in transcription termination?. Ann Inst Pasteur Microbiol. 1986; 137B(3):259-70. DOI: 10.1016/s0769-2609(86)80116-8. View

Gilson E, Perrin D, CLEMENT J, Szmelcman S, Dassa E, Hofnung M . Palindromic units from E. coli as binding sites for a chromoid-associated protein. FEBS Lett. 1986; 206(2):323-8. DOI: 10.1016/0014-5793(86)81005-5. View

Gilson E, Saurin W, Perrin D, Bachellier S, Hofnung M . The BIME family of bacterial highly repetitive sequences. Res Microbiol. 1991; 142(2-3):217-22. DOI: 10.1016/0923-2508(91)90033-7. View

Makino K, Kim S, Shinagawa H, Amemura M, Nakata A . Molecular analysis of the cryptic and functional phn operons for phosphonate use in Escherichia coli K-12. J Bacteriol. 1991; 173(8):2665-72. PMC: 207835. DOI: 10.1128/jb.173.8.2665-2672.1991. View

Versalovic J, Koeuth T, Lupski J . Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 1991; 19(24):6823-31. PMC: 329316. DOI: 10.1093/nar/19.24.6823. View

10.

Riley D, Samadpour M, Krieger J . Detection of variable DNA repeats in diverse eukaryotic microorganisms by a single set of polymerase chain reaction primers. J Clin Microbiol. 1991; 29(12):2746-51. PMC: 270426. DOI: 10.1128/jcm.29.12.2746-2751.1991. View

11.

Welsh J, McClelland M . Genomic fingerprinting using arbitrarily primed PCR and a matrix of pairwise combinations of primers. Nucleic Acids Res. 1991; 19(19):5275-9. PMC: 328887. DOI: 10.1093/nar/19.19.5275. View

12.

Fujitani S, Komano T, Inouye S . A unique repetitive DNA sequence in the Myxococcus xanthus genome. J Bacteriol. 1991; 173(6):2125-7. PMC: 207750. DOI: 10.1128/jb.173.6.2125-2127.1991. View

13.

Edwards A, Civitello A, HAMMOND H, Caskey C . DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am J Hum Genet. 1991; 49(4):746-56. PMC: 1683171. View

14.

Noda A, Courtright J, Denor P, Webb G, Kohara Y, Ishihama A . Rapid identification of specific genes in E. coli by hybridization to membranes containing the ordered set of phage clones. Biotechniques. 1991; 10(4):474, 476-7. View

15.

Gilson E, Saurin W, Perrin D, Bachellier S, Hofnung M . Palindromic units are part of a new bacterial interspersed mosaic element (BIME). Nucleic Acids Res. 1991; 19(7):1375-83. PMC: 333889. DOI: 10.1093/nar/19.7.1375. View

16.

Gilson E, Perrin D, Hofnung M . DNA polymerase I and a protein complex bind specifically to E. coli palindromic unit highly repetitive DNA: implications for bacterial chromosome organization. Nucleic Acids Res. 1990; 18(13):3941-52. PMC: 331097. DOI: 10.1093/nar/18.13.3941. View

17.

Blackburn E . Telomeres: structure and synthesis. J Biol Chem. 1990; 265(11):5919-21. View

18.

Shyamala V, Schneider E, AMES G . Tandem chromosomal duplications: role of REP sequences in the recombination event at the join-point. EMBO J. 1990; 9(3):939-46. PMC: 551756. DOI: 10.1002/j.1460-2075.1990.tb08192.x. View

19.

Schmid C, Jelinek W . The Alu family of dispersed repetitive sequences. Science. 1982; 216(4550):1065-70. DOI: 10.1126/science.6281889. View

20.

Higgins C, AMES G, Barnes W, CLEMENT J, Hofnung M . A novel intercistronic regulatory element of prokaryotic operons. Nature. 1982; 298(5876):760-2. DOI: 10.1038/298760a0. View