Gautam P, Sinha S
ACS Omega. 2024; 9(21):22625-22634.
PMID: 38826544
PMC: 11137707.
DOI: 10.1021/acsomega.4c00049.
Zraly C, Schultz R, Diaz M, Dingwall A
Nucleic Acids Res. 2023; 51(18):9672-9689.
PMID: 37638761
PMC: 10570056.
DOI: 10.1093/nar/gkad698.
Kapil S, Sobti R, Kaur T
Mol Cell Biochem. 2023; 479(1):109-125.
PMID: 37004638
DOI: 10.1007/s11010-023-04712-4.
Xue Y, Krishnan A, Chahda J, Schweickart R, Sousa-Neves R, Mizutani C
PLoS Biol. 2023; 21(3):e3002021.
PMID: 36913435
PMC: 10035841.
DOI: 10.1371/journal.pbio.3002021.
Forbes Beadle L, Love J, Shapovalova Y, Artemev A, Rattray M, Ashe H
PLoS Biol. 2023; 21(1):e3001956.
PMID: 36649329
PMC: 9882958.
DOI: 10.1371/journal.pbio.3001956.
PIF4 enhances DNA binding of CDF2 to co-regulate target gene expression and promote Arabidopsis hypocotyl cell elongation.
Gao H, Song W, Severing E, Vayssieres A, Huettel B, Franzen R
Nat Plants. 2022; 8(9):1082-1093.
PMID: 35970973
PMC: 9477738.
DOI: 10.1038/s41477-022-01213-y.
The nested embryonic dorsal domains of BMP-target genes are not scaled to size during the evolution of Drosophila species.
Chahda J, Ambrosi P, Mizutani C
J Exp Zool B Mol Dev Evol. 2022; 340(2):131-142.
PMID: 35451554
PMC: 9587137.
DOI: 10.1002/jez.b.23137.
Developmental gene regulatory network connections predicted by machine learning from gene expression data alone.
Zhang J, Ibrahim F, Najmulski E, Katholos G, Altarawy D, Heath L
PLoS One. 2021; 16(12):e0261926.
PMID: 34962963
PMC: 8714117.
DOI: 10.1371/journal.pone.0261926.
Genetic, morphometric, and molecular analyses of interspecies differences in head shape and hybrid developmental defects in the wasp genus Nasonia.
Cohen L, Jewell R, Moody D, Arsala D, Werren J, Lynch J
G3 (Bethesda). 2021; 11(12).
PMID: 34580730
PMC: 8664464.
DOI: 10.1093/g3journal/jkab313.
Enhancer dependence of cell-type-specific gene expression increases with developmental age.
Cai W, Huang J, Zhu Q, Li B, Seruggia D, Zhou P
Proc Natl Acad Sci U S A. 2020; 117(35):21450-21458.
PMID: 32817427
PMC: 7474592.
DOI: 10.1073/pnas.2008672117.
Odd-paired is a pioneer-like factor that coordinates with Zelda to control gene expression in embryos.
Koromila T, Gao F, Iwasaki Y, He P, Pachter L, Gergen J
Elife. 2020; 9.
PMID: 32701060
PMC: 7417190.
DOI: 10.7554/eLife.59610.
Robustness of the Dorsal morphogen gradient with respect to morphogen dosage.
Al Asafen H, Bandodkar P, Carrell-Noel S, Schloop A, Friedman J, Reeves G
PLoS Comput Biol. 2020; 16(4):e1007750.
PMID: 32251432
PMC: 7162545.
DOI: 10.1371/journal.pcbi.1007750.
The Drosophila MLR COMPASS complex is essential for programming cis-regulatory information and maintaining epigenetic memory during development.
Zraly C, Zakkar A, Perez J, Ng J, White K, Slattery M
Nucleic Acids Res. 2020; 48(7):3476-3495.
PMID: 32052053
PMC: 7144903.
DOI: 10.1093/nar/gkaa082.
Mechanism and implications of morphogen shuttling: Lessons learned from dorsal and Cactus in Drosophila.
Schloop A, Carrell-Noel S, Friedman J, Thomas A, Reeves G
Dev Biol. 2020; 461(1):13-18.
PMID: 31987808
PMC: 7513736.
DOI: 10.1016/j.ydbio.2020.01.011.
Setting up for gastrulation: D. melanogaster.
Stathopoulos A, Newcomb S
Curr Top Dev Biol. 2020; 136:3-32.
PMID: 31959292
PMC: 7296044.
DOI: 10.1016/bs.ctdb.2019.11.004.
Distinct Roles of Broadly Expressed Repressors Support Dynamic Enhancer Action and Change in Time.
Koromila T, Stathopoulos A
Cell Rep. 2019; 28(4):855-863.e5.
PMID: 31340149
PMC: 6927530.
DOI: 10.1016/j.celrep.2019.06.063.
A single-cell transcriptomic atlas of the developing chicken limb.
Feregrino C, Sacher F, Parnas O, Tschopp P
BMC Genomics. 2019; 20(1):401.
PMID: 31117954
PMC: 6530069.
DOI: 10.1186/s12864-019-5802-2.
Ancient mechanisms for the evolution of the bicoid homeodomain's function in fly development.
Liu Q, Onal P, Datta R, Rogers J, Schmidt-Ott U, Bulyk M
Elife. 2018; 7.
PMID: 30298815
PMC: 6177261.
DOI: 10.7554/eLife.34594.
Ankyrin domain encoding genes from an ancient horizontal transfer are functionally integrated into Nasonia developmental gene regulatory networks.
Pers D, Lynch J
Genome Biol. 2018; 19(1):148.
PMID: 30266092
PMC: 6161386.
DOI: 10.1186/s13059-018-1526-x.
Pairs of Adjacent Conserved Noncoding Elements Separated by Conserved Genomic Distances Act as Cis-Regulatory Units.
Li L, Barth N, Hirth E, Taher L
Genome Biol Evol. 2018; 10(9):2535-2550.
PMID: 30184074
PMC: 6161761.
DOI: 10.1093/gbe/evy196.