Cell-free Protein Synthesis in an Autoinduction System for NMR Studies of Protein-protein Interactions
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Nuclear Medicine
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Cell-free protein synthesis systems provide facile access to proteins in a nascent state that enables formation of soluble, native protein-protein complexes even if one of the protein components is prone to self-aggregation and precipitation. Combined with selective isotope-labeling, this allows the rapid analysis of protein-protein interactions with few 15N-HSQC spectra. The concept is demonstrated with binary and ternary complexes between the chi, psi and gamma subunits of Escherichia coli DNA polymerase III: nascent, selectively 15N-labeled psi produced in the presence of chi resulted in a soluble, correctly folded chi-psi complex, whereas psi alone precipitated irrespective of whether gamma was present or not. The 15N-HSQC spectra showed that the N-terminal segment of psi is mobile in the chi-psi complex, yet important for its binding to gamma. The sample preparation was greatly enhanced by an autoinduction strategy, where the T7 RNA polymerase needed for transcription of a gene in a T7-promoter vector was produced in situ.
Structural characterisation of the complete cycle of sliding clamp loading in Escherichia coli.
Xu Z, Jergic S, Lo A, Pradhan A, Brown S, Bouwer J Nat Commun. 2024; 15(1):8372.
PMID: 39333521 PMC: 11436948. DOI: 10.1038/s41467-024-52623-9.
Sugiki T, Kobayashi N, Fujiwara T Comput Struct Biotechnol J. 2017; 15:328-339.
PMID: 28487762 PMC: 5408130. DOI: 10.1016/j.csbj.2017.04.001.
Wawrzycka A, Gross M, Wasaznik A, Konieczny I Proc Natl Acad Sci U S A. 2015; 112(31):E4188-96.
PMID: 26195759 PMC: 4534257. DOI: 10.1073/pnas.1504926112.
A direct proofreader-clamp interaction stabilizes the Pol III replicase in the polymerization mode.
Jergic S, Horan N, Elshenawy M, Mason C, Urathamakul T, Ozawa K EMBO J. 2013; 32(9):1322-33.
PMID: 23435564 PMC: 3642676. DOI: 10.1038/emboj.2012.347.
A single subunit directs the assembly of the Escherichia coli DNA sliding clamp loader.
Park A, Jergic S, Politis A, Ruotolo B, Hirshberg D, Jessop L Structure. 2010; 18(3):285-92.
PMID: 20223211 PMC: 4869865. DOI: 10.1016/j.str.2010.01.009.