» Articles » PMID: 15766289

Ribozyme-catalyzed Aminoacylation from CoA Thioesters

Overview
Journal Biochemistry
Specialty Biochemistry
Date 2005 Mar 16
PMID 15766289
Citations 16
Authors
Affiliations
Soon will be listed here.
Abstract

Coenzyme A (CoA) thioesters play essential roles in modern metabolism. To demonstrate plausible biochemical functions of thioesters in the RNA world, we have isolated a new class of ribozymes (ACT) that catalyze self-aminoacylation from a number of CoA thioesters with catalytic efficiencies ranging from 7000 to 24 000 M(-1) x min(-1). Active thioester substrates are required to contain both a free alpha-amino group in the acyl moiety and a CoA as the thiol component. We hypothesize ribozyme-based aminoacylation systems using aminoacyl thioesters of CoA as the ancestors of modern aminoacyl tRNA synthetases. On the basis of our previous results [Huang et al. (2000) Biochemistry 39, 15548-15555; Coleman and Huang (2002) Chem. Biol. 9, 1227-1236], an extensive RNA-catalyzed "metabolic pathway" involving CoA and its thioesters is proposed. Complex contemporary metabolic systems could have evolved from the proposed ribozyme pathways.

Citing Articles

An anticodon-sensing T-boxzyme generates the elongator nonproteinogenic aminoacyl-tRNA in situ of a custom-made translation system for incorporation.

Lu W, Terasaka N, Sakaguchi Y, Suzuki T, Suzuki T, Suga H Nucleic Acids Res. 2024; 52(7):3938-3949.

PMID: 38477328 PMC: 11039980. DOI: 10.1093/nar/gkae151.


Post-transcriptional capping generates coenzyme A-linked RNA.

Sapkota K, Lucas J, Faulkner J, Lichte M, Guo Y, Burke D RNA Biol. 2023; 21(1):1-12.

PMID: 38032240 PMC: 10761072. DOI: 10.1080/15476286.2023.2288740.


Large scale screening of CRISPR guide RNAs using an optimized high throughput robotics system.

Spangler J, Leski T, Schultzhaus Z, Wang Z, Stenger D Sci Rep. 2022; 12(1):13953.

PMID: 35977955 PMC: 9385653. DOI: 10.1038/s41598-022-17474-8.


Emergent properties as by-products of prebiotic evolution of aminoacylation ribozymes.

Janzen E, Shen Y, Vazquez-Salazar A, Liu Z, Blanco C, Kenchel J Nat Commun. 2022; 13(1):3631.

PMID: 35752631 PMC: 9233669. DOI: 10.1038/s41467-022-31387-0.


A combinatorial method to isolate short ribozymes from complex ribozyme libraries.

Arriola J, Muller U Nucleic Acids Res. 2020; 48(20):e116.

PMID: 33035338 PMC: 7672470. DOI: 10.1093/nar/gkaa834.