Shin B, An G, Cockrell R
PLoS Comput Biol. 2024; 20(1):e1011776.
PMID: 38261584
PMC: 10805321.
DOI: 10.1371/journal.pcbi.1011776.
Han N, Liu Z
Front Cell Dev Biol. 2023; 11:1232146.
PMID: 37635865
PMC: 10450511.
DOI: 10.3389/fcell.2023.1232146.
Tandon A, Raza M, Park S, Lee S, Nguyen T, Vu T
ACS Omega. 2021; 6(41):27038-27044.
PMID: 34693123
PMC: 8529593.
DOI: 10.1021/acsomega.1c03593.
Lafuente-Gracia L, Borgiani E, Nasello G, Geris L
Front Bioeng Biotechnol. 2021; 9:703725.
PMID: 34660547
PMC: 8514728.
DOI: 10.3389/fbioe.2021.703725.
Reis R, Pigozzo A, Bonin C, de Melo Quintela B, Pompei L, Vieira A
Front Mol Biosci. 2021; 8:639423.
PMID: 34355020
PMC: 8329239.
DOI: 10.3389/fmolb.2021.639423.
Agent-Based Learning Model for the Obesity Paradox in RCC.
Belenchia M, Rocchetti G, Maestri S, Cimadamore A, Montironi R, Santoni M
Front Bioeng Biotechnol. 2021; 9:642760.
PMID: 33996779
PMC: 8116955.
DOI: 10.3389/fbioe.2021.642760.
Targeting the SARS-CoV2 nucleocapsid protein for potential therapeutics using immuno-informatics and structure-based drug discovery techniques.
Kwarteng A, Asiedu E, Sakyi S, Opoku Asiedu S
Biomed Pharmacother. 2020; 132:110914.
PMID: 33254432
PMC: 7574726.
DOI: 10.1016/j.biopha.2020.110914.
The Potential of Computational Modeling to Predict Disease Course and Treatment Response in Patients with Relapsing Multiple Sclerosis.
Pappalardo F, Russo G, Pennisi M, Parasiliti Palumbo G, Sgroi G, Motta S
Cells. 2020; 9(3).
PMID: 32121606
PMC: 7140535.
DOI: 10.3390/cells9030586.
Complex Stability and an Irrevertible Transition Reverted by Peptide and Fibroblasts in a Dynamic Model of Innate Immunity.
Abudukelimu A, Barberis M, Redegeld F, Sahin N, Sharma R, Westerhoff H
Front Immunol. 2020; 10:3091.
PMID: 32117197
PMC: 7033641.
DOI: 10.3389/fimmu.2019.03091.
Game of neutrophils: modeling the balance between apoptosis and necrosis.
Presbitero A, Mancini E, Castiglione F, Krzhizhanovskaya V, Quax R
BMC Bioinformatics. 2019; 20(Suppl 6):475.
PMID: 31823711
PMC: 6905093.
DOI: 10.1186/s12859-019-3044-6.
A personalized computational model of edema formation in myocarditis based on long-axis biventricular MRI images.
Reis R, Lara Fernandes J, Schmal T, Rocha B, Dos Santos R, Lobosco M
BMC Bioinformatics. 2019; 20(Suppl 6):532.
PMID: 31822264
PMC: 6905016.
DOI: 10.1186/s12859-019-3139-0.
Computer Modeling of Clonal Dominance: Memory-Anti-Naïve and Its Curbing by Attrition.
Castiglione F, Ghersi D, Celada F
Front Immunol. 2019; 10:1513.
PMID: 31338096
PMC: 6626922.
DOI: 10.3389/fimmu.2019.01513.
MiStImm: an agent-based simulation tool to study the self-nonself discrimination of the adaptive immune response.
Kerepesi C, Bakacs T, Szabados T
Theor Biol Med Model. 2019; 16(1):9.
PMID: 31046789
PMC: 6498635.
DOI: 10.1186/s12976-019-0105-5.
Multiscale Agent-Based and Hybrid Modeling of the Tumor Immune Microenvironment.
Norton K, Gong C, Jamalian S, Popel A
Processes (Basel). 2019; 7(1).
PMID: 30701168
PMC: 6349239.
DOI: 10.3390/pr7010037.
Possibility of Controlling Self-Organized Patterns with Totalistic Cellular Automata Consisting of Both Rules like Game of Life and Rules Producing Turing Patterns.
Ishida T
Micromachines (Basel). 2018; 9(7).
PMID: 30424272
PMC: 6082263.
DOI: 10.3390/mi9070339.
Breast cancer vaccination comes to age: impacts of bioinformatics.
Parvizpour S, Razmara J, Omidi Y
Bioimpacts. 2018; 8(3):223-235.
PMID: 30211082
PMC: 6128970.
DOI: 10.15171/bi.2018.25.
Current Strategies and Applications for Precision Drug Design.
Wang C, Xu P, Zhang L, Huang J, Zhu K, Luo C
Front Pharmacol. 2018; 9:787.
PMID: 30072901
PMC: 6060444.
DOI: 10.3389/fphar.2018.00787.
Review of the systems biology of the immune system using agent-based models.
Shinde S, Kurhekar M
IET Syst Biol. 2018; 12(3):83-92.
PMID: 29745901
PMC: 8687247.
DOI: 10.1049/iet-syb.2017.0073.
The Role of Multiscale Protein Dynamics in Antigen Presentation and T Lymphocyte Recognition.
Eccleston R, Wan S, Dalchau N, Coveney P
Front Immunol. 2017; 8:797.
PMID: 28740497
PMC: 5502259.
DOI: 10.3389/fimmu.2017.00797.
Can the Immune System Perform a t-Test?.
Faria B, Mostardinha P, Vistulo de Abreu F
PLoS One. 2017; 12(1):e0169464.
PMID: 28046042
PMC: 5207702.
DOI: 10.1371/journal.pone.0169464.
