A Second-generation Genetic Linkage Map of Tilapia (Oreochromis Spp.)

Overview

Journal Genetics

Publisher Oxford University Press

Specialty Genetics

Date 2005 Feb 18

PMID 15716505

Citations 97

Authors

Bo-Young Lee

Woo-Jai Lee

J Todd Streelman

Karen L Carleton

Aimee E Howe

Gideon Hulata

Audun Slettan

Justin E Stern

Yohey Terai

Thomas D Kocher

Affiliations

Soon will be listed here.

Abstract

We constructed a second-generation linkage map of tilapia from the F(2) progeny of an interspecific cross between Oreochromis niloticus and Oreochromis aureus. The map reported here contains 525 microsatellite and 21 gene-based markers. It spans 1311 cM in 24 linkage groups, for an average marker spacing of 2.4 cM. We detected associations of sex and red color with markers on linkage group 3. This map will enable mapping and selective breeding of quantitative traits important to the economic culture of tilapia as a food fish and will contribute to the study of closely related cichlids that have undergone explosive adaptive radiation in the lakes of East Africa.

Citing Articles

Population structure and genetic diversity of Nile tilapia (Oreochromis niloticus) using microsatellite markers from selected water bodies in southwest Ethiopia.

Ahmed S, Hordofa B, Meressa B, Tamiru M Vet Med Sci. 2023; 9(5):2095-2106.

PMID: 37483169 PMC: 10508511. DOI: 10.1002/vms3.1212.

Absence of Gene Is Concordant with Femaleness in Cichlids Harboring the LG1 Sex-Determination System.

Curzon A, Shirak A, Benet-Perlberg A, Naor A, Low-Tanne S, Sharkawi H Int J Mol Sci. 2022; 23(14).

PMID: 35886982 PMC: 9316214. DOI: 10.3390/ijms23147636.

Patterns of sex-biased dispersal are consistent with social and ecological constraints in a group-living cichlid fish.

Bose A, Koch L, Dabernig-Heinz J, Grimm J, Sefc K, Jordan A BMC Ecol Evol. 2022; 22(1):21.

PMID: 35236283 PMC: 8889715. DOI: 10.1186/s12862-022-01980-4.

First identification of two co-existing genome-wide significant sex quantitative trait loci (QTL) in red tilapia using integrative QTL mapping.

Zhu Z, Lin Y, Ai C, Xiong Y, Huang D, Yao Y Zool Res. 2022; 43(2):205-216.

PMID: 35084126 PMC: 8920840. DOI: 10.24272/j.issn.2095-8137.2021.402.

Gene Variant of () Is Concordant with Female Determination in Cichlids.

Curzon A, Shirak A, Benet-Perlberg A, Naor A, Low-Tanne S, Sharkawi H Int J Mol Sci. 2021; 22(13).

PMID: 34209244 PMC: 8268354. DOI: 10.3390/ijms22137073.

References

Streelman J, Zardoya R, Meyer A, Karl S . Multilocus phylogeny of cichlid fishes (Pisces: Perciformes): evolutionary comparison of microsatellite and single-copy nuclear loci. Mol Biol Evol. 2000; 15(7):798-808. DOI: 10.1093/oxfordjournals.molbev.a025985. View

Naruse K, Fukamachi S, Mitani H, Kondo M, Matsuoka T, Kondo S . A detailed linkage map of medaka, Oryzias latipes: comparative genomics and genome evolution. Genetics. 2000; 154(4):1773-84. PMC: 1461045. DOI: 10.1093/genetics/154.4.1773. View

McConnell S, Beynon C, Leamon J, Skibinski D . Microsatellite marker based genetic linkage maps of Oreochromis aureus and O. niloticus (Cichlidae): extensive linkage group segment homologies revealed. Anim Genet. 2000; 31(3):214-8. DOI: 10.1046/j.1365-2052.2000.00631.x. View

Woods I, Kelly P, Chu F, Yan Y, Huang H, Postlethwait J . A comparative map of the zebrafish genome. Genome Res. 2000; 10(12):1903-14. PMC: 313070. DOI: 10.1101/gr.10.12.1903. View

Wright P, Land M . Urea production and transport in teleost fishes. Comp Biochem Physiol A Mol Integr Physiol. 2001; 119(1):47-54. DOI: 10.1016/s1095-6433(97)00407-8. View

Waldbieser G, Bosworth B, Nonneman D, Wolters W . A microsatellite-based genetic linkage map for channel catfish, Ictalurus punctatus. Genetics. 2001; 158(2):727-34. PMC: 1461682. DOI: 10.1093/genetics/158.2.727. View

Carleton K, Kocher T . Cone opsin genes of african cichlid fishes: tuning spectral sensitivity by differential gene expression. Mol Biol Evol. 2001; 18(8):1540-50. DOI: 10.1093/oxfordjournals.molbev.a003940. View

Baroiller J, DCotta H . Environment and sex determination in farmed fish. Comp Biochem Physiol C Toxicol Pharmacol. 2001; 130(4):399-409. DOI: 10.1016/s1532-0456(01)00267-8. View

Hilsdorf A, Penman D, Farias E, McAndrew B . Melanophore appearance in wild and red tilapia embryos. Pigment Cell Res. 2002; 15(1):57-61. DOI: 10.1034/j.1600-0749.2002.00058.x. View

10.

Crollius H, Jaillon O, Bernot A, Pelletier E, Dasilva C, Bouneau L . Genome-wide comparisons between human and tetraodon. Ernst Schering Res Found Workshop. 2002; (36):11-29. DOI: 10.1007/978-3-662-04667-8_2. View

11.

Singer A, Perlman H, Yan Y, Walker C, Corley-Smith G, Brandhorst B . Sex-specific recombination rates in zebrafish (Danio rerio). Genetics. 2002; 160(2):649-57. PMC: 1461993. DOI: 10.1093/genetics/160.2.649. View

12.

Carleton K, Streelman J, Lee B, Garnhart N, Kidd M, Kocher T . Rapid isolation of CA microsatellites from the tilapia genome. Anim Genet. 2002; 33(2):140-4. DOI: 10.1046/j.1365-2052.2002.00817.x. View

13.

Aparicio S, Chapman J, Stupka E, Putnam N, Chia J, Dehal P . Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science. 2002; 297(5585):1301-10. DOI: 10.1126/science.1072104. View

14.

Seale A, Riley L, Leedom T, Kajimura S, Dores R, Hirano T . Effects of environmental osmolality on release of prolactin, growth hormone and ACTH from the tilapia pituitary. Gen Comp Endocrinol. 2002; 128(2):91-101. DOI: 10.1016/s0016-6480(02)00027-8. View

15.

Albertson R, Streelman J, Kocher T . Directional selection has shaped the oral jaws of Lake Malawi cichlid fishes. Proc Natl Acad Sci U S A. 2003; 100(9):5252-7. PMC: 154331. DOI: 10.1073/pnas.0930235100. View

16.

Streelman J, Albertson R, Kocher T . Genome mapping of the orange blotch colour pattern in cichlid fishes. Mol Ecol. 2003; 12(9):2465-71. DOI: 10.1046/j.1365-294x.2003.01920.x. View

17.

Lee B, Penman D, Kocher T . Identification of a sex-determining region in Nile tilapia (Oreochromis niloticus) using bulked segregant analysis. Anim Genet. 2003; 34(5):379-83. DOI: 10.1046/j.1365-2052.2003.01035.x. View

18.

Moen T, Hoyheim B, Munck H, Gomez-Raya L . A linkage map of Atlantic salmon (Salmo salar) reveals an uncommonly large difference in recombination rate between the sexes. Anim Genet. 2004; 35(2):81-92. DOI: 10.1111/j.1365-2052.2004.01097.x. View

19.

Gilbey J, Verspoor E, McLay A, Houlihan D . A microsatellite linkage map for Atlantic salmon (Salmo salar). Anim Genet. 2004; 35(2):98-105. DOI: 10.1111/j.1365-2052.2004.01091.x. View

20.

Naruse K, Hori H, Shimizu N, Kohara Y, Takeda H . Medaka genomics: a bridge between mutant phenotype and gene function. Mech Dev. 2004; 121(7-8):619-28. DOI: 10.1016/j.mod.2004.04.014. View