de Vries I, Ammerlaan D, Heidebrecht T, Celie P, Geerke D, Joosten R
Life Sci Alliance. 2023; 6(9).
PMID: 37328191
PMC: 10276184.
DOI: 10.26508/lsa.202302150.
Kieft R, Zhang Y, Yan H, Schmitz R, Sabatini R
Nucleic Acids Res. 2023; 51(12):6208-6226.
PMID: 37194692
PMC: 10325913.
DOI: 10.1093/nar/gkad394.
Assis L, de Paiva S, Cano M
Pathogens. 2023; 12(3).
PMID: 36986389
PMC: 10057400.
DOI: 10.3390/pathogens12030467.
Staneva D, Bresson S, Auchynnikava T, Spanos C, Rappsilber J, Jeyaprakash A
Elife. 2022; 11.
PMID: 36169304
PMC: 9566855.
DOI: 10.7554/eLife.83135.
Jensen B, Phan I, McDonald J, Sur A, Gillespie M, Ranish J
mSphere. 2021; 6(1).
PMID: 33627513
PMC: 8544896.
DOI: 10.1128/mSphere.01204-20.
Carbohydrate biomarkers for future disease detection and treatment.
Cheng Y, Li M, Wang S, Peng H, Reid S, Ni N
Sci China Chem. 2020; 53(1):3-20.
PMID: 32214994
PMC: 7089153.
DOI: 10.1007/s11426-010-0021-3.
Identification of a novel base J binding protein complex involved in RNA polymerase II transcription termination in trypanosomes.
Kieft R, Zhang Y, Marand A, Moran J, Bridger R, Wells L
PLoS Genet. 2020; 16(2):e1008390.
PMID: 32084124
PMC: 7055916.
DOI: 10.1371/journal.pgen.1008390.
- and - expression in clinical no response-antimonial isolates.
Ahmadian S, Eslami G, Fatahi A, Hosseini S, Vakili M, Ajamein Fahadan V
J Parasit Dis. 2019; 43(1):39-45.
PMID: 30956444
PMC: 6423244.
DOI: 10.1007/s12639-018-1052-5.
A method for the efficient and selective identification of 5-hydroxymethyluracil in genomic DNA.
Bullard W, Kieft R, Sabatini R
Biol Methods Protoc. 2017; 2(1).
PMID: 29276783
PMC: 5741180.
DOI: 10.1093/biomethods/bpw006.
Base J glucosyltransferase does not regulate the sequence specificity of J synthesis in trypanosomatid telomeric DNA.
Bullard W, Cliffe L, Wang P, Wang Y, Sabatini R
Mol Biochem Parasitol. 2016; 204(2):77-80.
PMID: 26815240
PMC: 4889113.
DOI: 10.1016/j.molbiopara.2016.01.005.
Histone H3 Variant Regulates RNA Polymerase II Transcription Termination and Dual Strand Transcription of siRNA Loci in Trypanosoma brucei.
Reynolds D, Hofmeister B, Cliffe L, Alabady M, Siegel T, Schmitz R
PLoS Genet. 2016; 12(1):e1005758.
PMID: 26796527
PMC: 4721609.
DOI: 10.1371/journal.pgen.1005758.
Defining the sequence requirements for the positioning of base J in DNA using SMRT sequencing.
Genest P, Baugh L, Taipale A, Zhao W, Jan S, van Luenen H
Nucleic Acids Res. 2015; 43(4):2102-15.
PMID: 25662217
PMC: 4344527.
DOI: 10.1093/nar/gkv095.
Regulation of transcription termination by glucosylated hydroxymethyluracil, base J, in Leishmania major and Trypanosoma brucei.
Reynolds D, Cliffe L, Forstner K, Hon C, Siegel T, Sabatini R
Nucleic Acids Res. 2014; 42(15):9717-29.
PMID: 25104019
PMC: 4150806.
DOI: 10.1093/nar/gku714.
Quantitative mass spectrometry-based analysis of β-D-glucosyl-5-hydroxymethyluracil in genomic DNA of Trypanosoma brucei.
Liu S, Ji D, Cliffe L, Sabatini R, Wang Y
J Am Soc Mass Spectrom. 2014; 25(10):1763-70.
PMID: 25078157
PMC: 4163122.
DOI: 10.1007/s13361-014-0960-6.
Identification of the glucosyltransferase that converts hydroxymethyluracil to base J in the trypanosomatid genome.
Bullard W, Lopes da Rosa-Spiegler J, Liu S, Wang Y, Sabatini R
J Biol Chem. 2014; 289(29):20273-82.
PMID: 24891501
PMC: 4106341.
DOI: 10.1074/jbc.M114.579821.
Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania.
van Luenen H, Farris C, Jan S, Genest P, Tripathi P, Velds A
Cell. 2012; 150(5):909-21.
PMID: 22939620
PMC: 3684241.
DOI: 10.1016/j.cell.2012.07.030.
JBP1 and JBP2 proteins are Fe2+/2-oxoglutarate-dependent dioxygenases regulating hydroxylation of thymidine residues in trypanosome DNA.
Cliffe L, Hirsch G, Wang J, Ekanayake D, Bullard W, Hu M
J Biol Chem. 2012; 287(24):19886-95.
PMID: 22514282
PMC: 3370173.
DOI: 10.1074/jbc.M112.341974.
The structural basis for recognition of base J containing DNA by a novel DNA binding domain in JBP1.
Heidebrecht T, Christodoulou E, Chalmers M, Jan S, Riet B, Grover R
Nucleic Acids Res. 2011; 39(13):5715-28.
PMID: 21415010
PMC: 3141245.
DOI: 10.1093/nar/gkr125.
Chromatin-mediated epigenetic regulation in the malaria parasite Plasmodium falciparum.
Cui L, Miao J
Eukaryot Cell. 2010; 9(8):1138-49.
PMID: 20453074
PMC: 2918932.
DOI: 10.1128/EC.00036-10.
Two thymidine hydroxylases differentially regulate the formation of glucosylated DNA at regions flanking polymerase II polycistronic transcription units throughout the genome of Trypanosoma brucei.
Cliffe L, Siegel T, Marshall M, Cross G, Sabatini R
Nucleic Acids Res. 2010; 38(12):3923-35.
PMID: 20215442
PMC: 2896530.
DOI: 10.1093/nar/gkq146.