ArrayExpress--a Public Repository for Microarray Gene Expression Data at the EBI

Overview

Journal Nucleic Acids Res

Publisher Oxford University Press

Specialty Biochemistry

Date 2004 Dec 21

PMID 15608260

Citations 150

Authors

H Parkinson

U Sarkans

M Shojatalab

N Abeygunawardena

S Contrino

R Coulson

A Farne

G Garcia Lara

E Holloway

M Kapushesky

P Lilja

G Mukherjee

A Oezcimen

T Rayner

P Rocca-Serra

A Sharma

S Sansone

A Brazma

Affiliations

Soon will be listed here.

Abstract

ArrayExpress is a public repository for microarray data that supports the MIAME (Minimum Information About a Microarray Experiment) requirements and stores well-annotated raw and normalized data. As of November 2004, ArrayExpress contains data from approximately 12,000 hybridizations covering 35 species. Data can be submitted online or directly from local databases or LIMS in a standard format, and password-protected access to prepublication data is provided for reviewers and authors. The data can be retrieved by accession number or queried by various parameters such as species, author and array platform. A facility to query experiments by gene and sample properties is provided for a growing subset of curated data that is loaded in to the ArrayExpress data warehouse. Data can be visualized and analysed using Expression Profiler, the integrated data analysis tool. ArrayExpress is available at http://www.ebi.ac.uk/arrayexpress.

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