PDZBase: a Protein-protein Interaction Database for PDZ-domains

Overview

Journal Bioinformatics

Publisher Oxford University Press

Specialty Biology

Date 2004 Oct 30

PMID 15513994

Citations 96

Authors

Thijs Beuming

Lucy Skrabanek

Masha Y Niv

Piali Mukherjee

Harel Weinstein

Affiliations

Soon will be listed here.

Abstract

PDZBase is a database that aims to contain all known PDZ-domain-mediated protein-protein interactions. Currently, PDZBase contains approximately 300 such interactions, which have been manually extracted from > 200 articles. The database can be queried through both sequence motif and keyword-based searches, and the sequences of interacting proteins can be visually inspected through alignments (for the comparison of several interactions), or as residue-based diagrams including schematic secondary structure information (for individual complexes).

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