Zhong Z, Li Y, Sun Q, Chen D
Comput Struct Biotechnol J. 2024; 23:3771-3779.
PMID: 39525088
PMC: 11550727.
DOI: 10.1016/j.csbj.2024.10.042.
Pandiyan A, Mallikarjun J, Maheshwari H, Gowrishankar J
Nucleic Acids Res. 2024; 52(20):12438-12455.
PMID: 39373509
PMC: 11551753.
DOI: 10.1093/nar/gkae839.
Wang T, He F, He T, Lin C, Guan X, Qin Z
Nucleic Acids Res. 2024; 52(18):11394-11407.
PMID: 39271106
PMC: 11472063.
DOI: 10.1093/nar/gkae786.
Shine M, Gordon J, Scharfen L, Zigackova D, Herzel L, Neugebauer K
Nat Rev Mol Cell Biol. 2024; 25(7):534-554.
PMID: 38509203
PMC: 11199108.
DOI: 10.1038/s41580-024-00706-2.
Wee L, Tong A, Ariza A, Canari-Chumpitaz C, Grob P, Nogales E
Cell. 2023; 186(6):1244-1262.e34.
PMID: 36931247
PMC: 10135430.
DOI: 10.1016/j.cell.2023.02.008.
Patterns of abundance, chromosomal localization, and domain organization among c-di-GMP-metabolizing genes revealed by comparative genomics of five alphaproteobacterial orders.
Koppenhofer S, Lang A
BMC Genomics. 2022; 23(1):834.
PMID: 36522693
PMC: 9756655.
DOI: 10.1186/s12864-022-09072-9.
Systematic analysis of the underlying genomic architecture for transcriptional-translational coupling in prokaryotes.
Bharti R, Siebert D, Blombach B, Grimm D
NAR Genom Bioinform. 2022; 4(3):lqac074.
PMID: 36186922
PMC: 9514032.
DOI: 10.1093/nargab/lqac074.
RNase HI Depletion Strongly Potentiates Cell Killing by Rifampicin in Mycobacteria.
Al-Zubaidi A, Cheung C, Cook G, Taiaroa G, Mizrahi V, Lott J
Antimicrob Agents Chemother. 2022; 66(10):e0209121.
PMID: 36154174
PMC: 9578417.
DOI: 10.1128/aac.02091-21.
Modulation of RecFORQ- and RecA-Mediated Homologous Recombination in Escherichia coli by Isoforms of Translation Initiation Factor IF2.
Mallikarjun J, SaiSree L, Himabindu P, Anupama K, Reddy M, Gowrishankar J
J Bacteriol. 2022; 204(4):e0056921.
PMID: 35343793
PMC: 9017302.
DOI: 10.1128/jb.00569-21.
THSC/TREX-2 deficiency causes replication stress and genome instability in Caenorhabditis elegans.
Zheleva A, Camino L, Fernandez-Fernandez N, Garcia-Rubio M, Askjaer P, Garcia-Muse T
J Cell Sci. 2021; 134(20).
PMID: 34553761
PMC: 10658913.
DOI: 10.1242/jcs.258435.
Topoisomerase I Essentiality, DnaA-Independent Chromosomal Replication, and Transcription-Replication Conflict in Escherichia coli.
Leela J, Raghunathan N, Gowrishankar J
J Bacteriol. 2021; 203(17):e0019521.
PMID: 34124945
PMC: 8351630.
DOI: 10.1128/JB.00195-21.
Attenuator LRR - a regulatory tool for modulating gene expression in Gram-positive bacteria.
Cai X, Wang Q, Fang Y, Yao D, Zhan Y, An B
Microb Biotechnol. 2021; 14(6):2538-2551.
PMID: 33720523
PMC: 8601186.
DOI: 10.1111/1751-7915.13797.
Coupled Transcription-Translation in Prokaryotes: An Old Couple With New Surprises.
Irastortza-Olaziregi M, Amster-Choder O
Front Microbiol. 2021; 11:624830.
PMID: 33552035
PMC: 7858274.
DOI: 10.3389/fmicb.2020.624830.
NusG, an Ancient Yet Rapidly Evolving Transcription Factor.
Wang B, Artsimovitch I
Front Microbiol. 2021; 11:619618.
PMID: 33488562
PMC: 7819879.
DOI: 10.3389/fmicb.2020.619618.
A Decrease in Transcription Capacity Limits Growth Rate upon Translation Inhibition.
Zhang Q, Brambilla E, Li R, Shi H, Lagomarsino M, Sclavi B
mSystems. 2020; 5(5).
PMID: 32900870
PMC: 7483510.
DOI: 10.1128/mSystems.00575-20.
Functionally uncoupled transcription-translation in Bacillus subtilis.
Johnson G, Lalanne J, Peters M, Li G
Nature. 2020; 585(7823):124-128.
PMID: 32848247
PMC: 7483943.
DOI: 10.1038/s41586-020-2638-5.
Interplay between Position-Dependent Codon Usage Bias and Hydrogen Bonding at the 5' End of ORFeomes.
Villada J, Duran M, Lee P
mSystems. 2020; 5(4).
PMID: 32788408
PMC: 7426154.
DOI: 10.1128/mSystems.00613-20.
RNA Polymerase's Relationship with the Ribosome: Not So Physical, Most of the Time.
Chen M, Fredrick K
J Mol Biol. 2020; 432(14):3981-3986.
PMID: 32198117
PMC: 7316611.
DOI: 10.1016/j.jmb.2020.03.018.
Laboratory Evolution Experiments Help Identify a Predominant Region of Constitutive Stable DNA Replication Initiation.
Veetil R, Malhotra N, Dubey A, Seshasayee A
mSphere. 2020; 5(1).
PMID: 32102945
PMC: 7045392.
DOI: 10.1128/mSphere.00939-19.
Disruption of transcription-translation coordination in Escherichia coli leads to premature transcriptional termination.
Zhu M, Mori M, Hwa T, Dai X
Nat Microbiol. 2019; 4(12):2347-2356.
PMID: 31451774
PMC: 6903697.
DOI: 10.1038/s41564-019-0543-1.